View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20317_low_10 (Length: 243)
Name: NF20317_low_10
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20317_low_10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 45781102 - 45780980
Alignment:
| Q |
120 |
ttttgtgttaacactccggttatcatggaaaagggatcctgatattccagagttcagcggttggcatgtgagttcaaatgattatctaaaatatgaatga |
219 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45781102 |
ttttgtgttaacactc-gtttatcatggaaaagggatcctgatatttcagagttcggcggttggcatgtgagttcaaataattatctaaaatatgaatga |
45781004 |
T |
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| Q |
220 |
gatatttagtttttagtataattt |
243 |
Q |
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| T |
45781003 |
gatatttagtttttagtataattt |
45780980 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 24045735 - 24045777
Alignment:
| Q |
190 |
agttcaaatgattatctaaaatatgaatgagatatttagtttt |
232 |
Q |
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| T |
24045735 |
agttaaaataattatctaaaatatgaatgagatatttagtttt |
24045777 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 39106876 - 39106824
Alignment:
| Q |
191 |
gttcaaatgattatctaaaatatgaatgagatatttagtttttagtataattt |
243 |
Q |
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| T |
39106876 |
gttcaaataattatctaaaataagaatgagatattttgtttttaatacaattt |
39106824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 36548099 - 36548151
Alignment:
| Q |
190 |
agttcaaatgattatctaaaatatgaatgagatatttagtttttagtataatt |
242 |
Q |
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| T |
36548099 |
agttaaaataattatctgaaatatgaataagatatttagttttaaatataatt |
36548151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 38340696 - 38340738
Alignment:
| Q |
190 |
agttcaaatgattatctaaaatatgaatgagatatttagtttt |
232 |
Q |
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||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
38340696 |
agttcaaataattatctaaaataagaaagagatatttagtttt |
38340738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 15511584 - 15511544
Alignment:
| Q |
192 |
ttcaaatgattatctaaaatatgaatgagatatttagtttt |
232 |
Q |
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|||||||||||||||||| || |||||||||||||| |||| |
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| T |
15511584 |
ttcaaatgattatctaaattaagaatgagatatttaatttt |
15511544 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 34366177 - 34366137
Alignment:
| Q |
192 |
ttcaaatgattatctaaaatatgaatgagatatttagtttt |
232 |
Q |
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|||||||||||||||||| || |||||||||||||| |||| |
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| T |
34366177 |
ttcaaatgattatctaaattaagaatgagatatttaatttt |
34366137 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 13055914 - 13055954
Alignment:
| Q |
192 |
ttcaaatgattatctaaaatatgaatgagatatttagtttt |
232 |
Q |
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|||||||||||||||||| || |||||||||||||| |||| |
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| T |
13055914 |
ttcaaatgattatctaaattaagaatgagatatttaatttt |
13055954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 50977549 - 50977509
Alignment:
| Q |
192 |
ttcaaatgattatctaaaatatgaatgagatatttagtttt |
232 |
Q |
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|||||||||||||||||| || |||||||||||||| |||| |
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| T |
50977549 |
ttcaaatgattatctaaattaagaatgagatatttaatttt |
50977509 |
T |
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