View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20317_low_4 (Length: 323)
Name: NF20317_low_4
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20317_low_4 |
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| [»] scaffold0753 (1 HSPs) |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 9133909 - 9134212
Alignment:
| Q |
1 |
tgcggttaccatttctggagtgacatctttcatgatttttccaggccttgcaaacacgcgttgaatgacaaaagtatctttgcattgcat---aggaggt |
97 |
Q |
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| T |
9133909 |
tgcggttaccatttctggagtgacatctttcatgatttttccaggccttgcaaacacgcgttgaatgacaaaagtatctttgcattgcatgtcaggaggt |
9134008 |
T |
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| Q |
98 |
acctcctcttgggcttgcattgtaactacaatgtgaaaatgtaaatatgtcacaaacattcaataagtaagtaaacaaggaagctatttagtttgaattg |
197 |
Q |
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| T |
9134009 |
gcctcctcttgggcttgcattgtaactacaatgtgaaaatgtaaatatgtcacaaacattcaataag----taaacaaggaagctatttagtttgaattg |
9134104 |
T |
|
| Q |
198 |
ttacaaagctgagtatgaaacaacagaatacatgacattgtccaactaatccaatgtaaacattttgccaacatatccatgctttgatgtgtgtatacat |
297 |
Q |
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| T |
9134105 |
ttacaaaactgagtatgaaacaacagaatacatgacattgtccaactaatccaatgtaaacattttgccaacatatccatgctttgatgtgtgtatacat |
9134204 |
T |
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| Q |
298 |
gtaacatc |
305 |
Q |
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|||||||| |
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| T |
9134205 |
gtaacatc |
9134212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 9309014 - 9309153
Alignment:
| Q |
4 |
ggttaccatttctggagtgacatctttcatgatttttccaggccttgcaaacacgcgttgaatgacaaaagtatctttgcattgcat---aggaggtacc |
100 |
Q |
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| T |
9309014 |
ggttaccatttctggagtgatatcttttgccgttgctccagggcttgcaactacgctctgaaggagaaacttatctttgcattgcatgtcaggaggtgcc |
9309113 |
T |
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| Q |
101 |
tcctcttgggcttgcattgtaactacaatgtgaaaatgta |
140 |
Q |
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| T |
9309114 |
tccttttggccttgcattgtaactacaaagtgaaaatgta |
9309153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 9257518 - 9257446
Alignment:
| Q |
207 |
tgagtatgaaacaacagaatacatgacattgtccaactaa-tccaatgtaaacattttgccaacatatccatg |
278 |
Q |
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| T |
9257518 |
tgagtataaaagaacagaacacatgacattgtgcaactaaatcccatgtaaacattatgccaacatatccatg |
9257446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 9156255 - 9156199
Alignment:
| Q |
90 |
taggaggtacctcctcttgggcttgcattgtaactacaatgtgaaaatgtaaatatg |
146 |
Q |
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| T |
9156255 |
taggaggtgccttcttttgagcttgcattgtaactacaaagtgaaaatgtaaatatg |
9156199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 9168192 - 9168280
Alignment:
| Q |
40 |
tccaggccttgcaaacacgcgttgaatgacaaaagtatctttgcattgcat---aggaggtacctcctcttgggcttgcattgtaacta |
125 |
Q |
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| T |
9168192 |
tccaggccttgcaactatgctttgaaggagaaacttatctttgcattgcatgtcaggaggtgcctcctctagggcttgcattgtaacta |
9168280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 9257651 - 9257563
Alignment:
| Q |
40 |
tccaggccttgcaaacacgcgttgaatgacaaaagtatctttgcattgcat---aggaggtacctcctcttgggcttgcattgtaacta |
125 |
Q |
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| T |
9257651 |
tccaggccttgcaactatgctttgaaggagaaacttatctttgcattgcatgtcaggaggtgcctcctctagggcttgcattgtaacta |
9257563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 9300613 - 9300539
Alignment:
| Q |
75 |
tatctttgcattgcat---aggaggtacctcctcttgggcttgcattgtaactacaatgtgaaaatgtaaatatg |
146 |
Q |
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| T |
9300613 |
tatcattgcattgcatgtcaggaggtgcctccttttagccttgcattgtaactgcaaagtgaaaatgtaaatatg |
9300539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 9194629 - 9194573
Alignment:
| Q |
90 |
taggaggtacctcctcttgggcttgcattgtaactacaatgtgaaaatgtaaatatg |
146 |
Q |
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| T |
9194629 |
taggaggtgccttcttttgagcttgcattgtaacttccaagtgaaaatgtaaatatg |
9194573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 9232421 - 9232357
Alignment:
| Q |
207 |
tgagtatgaaacaacagaatacatgacattgtccaactaatccaatgtaaacattttgccaacat |
271 |
Q |
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||||||||||| |||| | ||||||||||||| |||| |||| ||||||||||| || |||||| |
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| T |
9232421 |
tgagtatgaaagaacatactacatgacattgtacaacaaatcacatgtaaacattatgtcaacat |
9232357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 5957 - 5911
Alignment:
| Q |
114 |
gcattgtaactacaatgtgaaaatgtaaatatgtcacaaacattcaa |
160 |
Q |
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| T |
5957 |
gcattgtaactgcaatgtgaaaatgtaaatatgacacaaacagtcaa |
5911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 38287 - 38223
Alignment:
| Q |
207 |
tgagtatgaaacaacagaatacatgacattgtccaactaatccaatgtaaacattttgccaacat |
271 |
Q |
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||||||||||| |||| | ||||||||||||| |||| |||| ||||||||||| || |||||| |
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| T |
38287 |
tgagtatgaaagaacatactacatgacattgtacaacaaatcacatgtaaacattatgtcaacat |
38223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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