View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20317_low_6 (Length: 311)
Name: NF20317_low_6
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20317_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4783962 - 4784162
Alignment:
| Q |
1 |
tgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4783962 |
tgtgataaggtggagtggtgctcctttggttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaat |
4784061 |
T |
|
| Q |
101 |
ctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
4784062 |
ctttcgatcaagctacaacgattaccaaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaata |
4784161 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
4784162 |
a |
4784162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4816391 - 4816591
Alignment:
| Q |
1 |
tgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4816391 |
tgtgatatggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcatggcggaagctctcaaattgaaaaagttaat |
4816490 |
T |
|
| Q |
101 |
ctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatata |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
4816491 |
ctttcgatcaagctacatcgattaccaaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaata |
4816590 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
4816591 |
a |
4816591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 4636825 - 4636530
Alignment:
| Q |
1 |
tgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaat |
100 |
Q |
| |
|
||||||| ||||||||||||||| | | |||||||||||||||||||||| || |||||| | || || |||||||||||||| |||| || |
|
|
| T |
4636825 |
tgtgatagggtggagtggtgctcgtatggttcctgttcataaggattatgttgtttctatgg------agggattaatctctcaaattgaaagagtttat |
4636732 |
T |
|
| Q |
101 |
ctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatata |
200 |
Q |
| |
|
||||| |||||||| |||||||||||| || | |||||||| || ||||||||||| | | ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4636731 |
ctttcaatcaagcttcaacgattaccacaacccatgcctacagtatatcgtgatgttattcttaatggaatcgagattttcaaaattagtgataaatata |
4636632 |
T |
|
| Q |
201 |
acaatctcgctggtttgaatcccaacaaacacattatactttcatctaaaaaatcaaagtccaagaagtcaaccatagtcatagttggagtttcatctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4636631 |
acaatctcgctggtttgaatcccaacaaacacattatactatcatctcaaaaacaaaagtccaagaagtcaactgtagtcatagttggagtttcatctct |
4636532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4630895 - 4630700
Alignment:
| Q |
1 |
tgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaat |
100 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| |||||||||||||| ||| |||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
4630895 |
tgtgataaggtggagtggtgctcgtatggttcctactcataaggattatgttgtgcttatgtactctcaagaaggaagctctcaaattgaaagagttaat |
4630796 |
T |
|
| Q |
101 |
ctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaa |
196 |
Q |
| |
|
||||| |||||||| | |||| |||| || |||| | || | |||||||||||| | |||||||||| |||||||| ||||||||||||||| |
|
|
| T |
4630795 |
ctttcaatcaagcttcgacgagcaccagaaactatacacacaatatatcgtgatgtcctgctgaatggaattgagattttcaaaataagtgataaa |
4630700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 4863890 - 4863690
Alignment:
| Q |
1 |
tgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaat |
100 |
Q |
| |
|
||||||| ||||||| ||| ||| | | ||||||||||||||||||||| | ||| |||| ||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
4863890 |
tgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaac |
4863791 |
T |
|
| Q |
101 |
ctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatata |
200 |
Q |
| |
|
|||||| ||||| |||||| ||||||||| | ||| ||| || |||||||| ||||||||||||||||||||||| |||||||| |||||| ||| |
|
|
| T |
4863790 |
ctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaata |
4863691 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
4863690 |
a |
4863690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 4666875 - 4666694
Alignment:
| Q |
29 |
gttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaa |
128 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| || ||| ||||||||||| |||||||||||| || ||||| |||||| ||||| |
|
|
| T |
4666875 |
gttcctgttcataaggattatgccttgactatggattctcaaggagggagccgtcaaattgaaagagttaatctttcaattaagcttcaacgagtaccag |
4666776 |
T |
|
| Q |
129 |
aatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgc |
210 |
Q |
| |
|
|| || | ||| || |||||||| | ||||||||||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
4666775 |
aaactgtctttacaaaatacagtgatgtccttcttaatggaatcgagattttaaaaataagtgacaaaaataacaatctcgc |
4666694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4643639 - 4643521
Alignment:
| Q |
1 |
tgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaat |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||||||||||||||||||||| || |||||| | ||||| |||||||||||| |||||| || |||| |
|
|
| T |
4643639 |
tgtgatagggtggagtggtgctcgtttggttcctgttcataaggattatgcaatgtctatggactatcaagaaggaagctctcaacttgaaagagctaat |
4643540 |
T |
|
| Q |
101 |
ctttcgatcaagctacaac |
119 |
Q |
| |
|
||||| |||||||| |||| |
|
|
| T |
4643539 |
ctttcaatcaagcttcaac |
4643521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 4672640 - 4672526
Alignment:
| Q |
5 |
ataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatcttt |
104 |
Q |
| |
|
||||| ||||||||||||| | | ||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
4672640 |
ataagttggagtggtgctcgtatggttcctgttcataaggattatgctgtcactatgtactctcaagaaggaagctctcaaattgaaagagttaatcttt |
4672541 |
T |
|
| Q |
105 |
cgatcaagctacaac |
119 |
Q |
| |
|
| || ||||| |||| |
|
|
| T |
4672540 |
ctattaagcttcaac |
4672526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 4712231 - 4712437
Alignment:
| Q |
30 |
ttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaa |
129 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||||| ||||||||| ||||||||| |||||| ||||| || ||||| |||||| |||| | |
|
|
| T |
4712231 |
ttcctgttcataaggattatgctgtgaaaatgtactctcaaaatggaagctctgaaattgaaagagttaacctttcaattaagcttcaacgagaaccaga |
4712330 |
T |
|
| Q |
130 |
atctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgctggtttgaatcccaacaaa |
229 |
Q |
| |
|
| ||| || || |||||||||| |||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
4712331 |
aagtatctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataa---tctcgctggtttgaatcccatcaaa |
4712427 |
T |
|
| Q |
230 |
cacattatac |
239 |
Q |
| |
|
|||||||||| |
|
|
| T |
4712428 |
cacattatac |
4712437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 4697345 - 4697437
Alignment:
| Q |
29 |
gttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacga |
121 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||| ||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
4697345 |
gttcctgttcataaagattatgctgtgtctatgcactctcaagaaggaagctctcaaattgaaagacttaatctttcaatcaagctacaacga |
4697437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 4846171 - 4846268
Alignment:
| Q |
30 |
ttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattacca |
127 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||| ||||||||| ||||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
4846171 |
ttcctgttcataaggattatgctgtgaaaatctactctcaaaatggaagctctgaaattgaaagagttaatctttcaatcaagcttcaacgattacca |
4846268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 4653459 - 4653372
Alignment:
| Q |
30 |
ttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctaca |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||| |||||| |||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
4653459 |
ttcctgttcataaggattatgttgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctaca |
4653372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 4846299 - 4846365
Alignment:
| Q |
161 |
ttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgctggtttgaatcccaacaaac |
230 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
4846299 |
ttgaatggaatcgagattttcaaagtaagtgataaa---aacaatctggctggtatgaatcccaacaaac |
4846365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 4643494 - 4643445
Alignment:
| Q |
161 |
ttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgc |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
4643494 |
ttgaatggaatcgagattttaaaaataagtgacaaaaataacaatctcgc |
4643445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 4672495 - 4672435
Alignment:
| Q |
150 |
gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgc |
210 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||| ||||||||||| |||| |||||||| |
|
|
| T |
4672495 |
gtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataataatctcgc |
4672435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 4697466 - 4697512
Alignment:
| Q |
150 |
gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaa |
196 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
4697466 |
gtgatgtcacattgaatggcatcgagattttgaaaataaatgataaa |
4697512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 4647437 - 4647378
Alignment:
| Q |
65 |
tctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgatta |
124 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
4647437 |
tctcaaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaacgatta |
4647378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 4661688 - 4661636
Alignment:
| Q |
79 |
ctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaat |
131 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||| |||| |||| |||||| |
|
|
| T |
4661688 |
ctctcaaattgaaagagttgatctttcaatcaagcttcaaccattatcaaaat |
4661636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4662959 - 4662899
Alignment:
| Q |
1 |
tgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatg |
61 |
Q |
| |
|
|||||||||||||||| || || | | |||||||||||||||||||||| ||||||||| |
|
|
| T |
4662959 |
tgtgataaggtggagtaatggtcgtatggttcctgttcataaggattatggtgtgactatg |
4662899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 18925879 - 18926078
Alignment:
| Q |
11 |
tggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatca |
110 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||||||| ||||||||| |||| || |||||||| |||||| ||| |||||||||||| || | |
|
|
| T |
18925879 |
tggagtggtgctcgtatggttcctgttcataaggattatgttgtgactatgtactctcgagaaggaagctcgcaaattaaaagagttaatctttcaataa |
18925978 |
T |
|
| Q |
111 |
agctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgc |
210 |
Q |
| |
|
||||||||||| |||| || ||| | || ||| ||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
18925979 |
agctacaacgagcaccagaaaatatctactcaaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataacaatctcgc |
18926078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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