View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20317_low_7 (Length: 294)

Name: NF20317_low_7
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20317_low_7
NF20317_low_7
[»] chr4 (6 HSPs)
chr4 (19-277)||(38178442-38178700)
chr4 (162-243)||(5531862-5531943)
chr4 (170-243)||(5922085-5922158)
chr4 (64-100)||(5654607-5654643)
chr4 (64-100)||(10546155-10546191)
chr4 (64-100)||(18513257-18513293)
[»] chr2 (3 HSPs)
chr2 (162-273)||(11733550-11733661)
chr2 (64-100)||(18570979-18571015)
chr2 (64-100)||(25544488-25544524)
[»] chr7 (5 HSPs)
chr7 (167-273)||(34840062-34840168)
chr7 (71-106)||(35917390-35917425)
chr7 (66-100)||(30516373-30516407)
chr7 (64-100)||(38134422-38134458)
chr7 (64-100)||(44172906-44172942)
[»] chr8 (4 HSPs)
chr8 (163-262)||(45319609-45319708)
chr8 (62-99)||(1639495-1639532)
chr8 (71-100)||(27733861-27733890)
chr8 (62-99)||(34201063-34201100)
[»] chr3 (2 HSPs)
chr3 (64-100)||(40150587-40150623)
chr3 (64-100)||(34409358-34409394)
[»] scaffold0037 (1 HSPs)
scaffold0037 (64-99)||(102912-102947)
[»] chr6 (5 HSPs)
chr6 (64-99)||(6299519-6299554)
chr6 (64-99)||(6306329-6306364)
chr6 (62-95)||(33135837-33135870)
chr6 (63-95)||(1893390-1893422)
chr6 (64-100)||(19602197-19602233)
[»] chr1 (4 HSPs)
chr1 (191-262)||(45453282-45453353)
chr1 (63-100)||(3921673-3921710)
chr1 (65-101)||(2471228-2471264)
chr1 (64-100)||(11571592-11571628)
[»] scaffold0011 (1 HSPs)
scaffold0011 (64-100)||(240037-240073)
[»] chr5 (1 HSPs)
chr5 (64-100)||(11596471-11596507)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 38178700 - 38178442
Alignment:
Q  19 agacattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcattttggtgctacaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  38178700 agacattgacacgacatgccgtaaataatttgataaaatgacgtaataatactttgagaaaatgatataattcaatgtaatctcctttcggtgctacaaa 38178601  T
Q  119 ctactttatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacac 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178600 ctacattatgtgttgtgtgtttgagaaatttgtaatgtgtgaacaggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacac 38178501  T
Q  219 ttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgttttctgtg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178500 ttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgttttctgtg 38178442  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 5531862 - 5531943
Alignment:
Q  162 caggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaaga 243  Q
    ||||||||||||| || || ||| | || || |||||||| |||||||||||||| ||||| ||||| ||||| ||||||||    
T  5531862 caggatttcaagtatgccactcacttggtggaggaactgggtctggaatgggaactcttctgatttcaaagatcagggaaga 5531943  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 5922158 - 5922085
Alignment:
Q  170 caagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaaga 243  Q
    ||||| ||||||||| | || || |||||||| |||||||||||||| ||||| ||||| ||||| ||||||||    
T  5922158 caagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaaga 5922085  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 5654643 - 5654607
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaatc 5654607  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 10546155 - 10546191
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  10546155 ataataatttgagaaaatgacataattcaatgtaatc 10546191  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 18513293 - 18513257
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18513293 ataataatttgagaaaatgacataattcaatgtaatc 18513257  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 11733661 - 11733550
Alignment:
Q  162 caggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgat 261  Q
    |||||||||||||||||||||||||||||||||| || ||||| || |||||||||||| | |||||||||||| | ||||| |||||||||||||||||    
T  11733661 caggatttcaagtgtgtcattcattgggaggtggcacgggttcaggcatgggaacacttttgatttcgaagattcgagaagaatatccggatcgtatgat 11733562  T
Q  262 gttgacgttttc 273  Q
    ||||||||||||    
T  11733561 gttgacgttttc 11733550  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 18570979 - 18571015
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  18570979 ataataatttgagaaaatgacataattcaatgtaatc 18571015  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 25544488 - 25544524
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| |||||||||||||||||||||| |||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatc 25544524  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 34840062 - 34840168
Alignment:
Q  167 tttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttga 266  Q
    ||||| ||||||||||| |||||||| ||||| || ||||||||||||||  |  | |||||||||||||| || || ||||| ||| | ||||||||||    
T  34840062 tttcaggtgtgtcattcgttgggaggaggaacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcctgataggatgatgttga 34840161  T
Q  267 cgttttc 273  Q
    |||||||    
T  34840162 cgttttc 34840168  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 35917425 - 35917390
Alignment:
Q  71 tttgagaaaatgatataattcaatgtaatctcattt 106  Q
    |||||||||||||||||||||||||||||| |||||    
T  35917425 tttgagaaaatgatataattcaatgtaatcacattt 35917390  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 30516407 - 30516373
Alignment:
Q  66 aatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||| ||||||||||||||||||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaatc 30516373  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 38134458 - 38134422
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  38134458 ataataatttgagaaaatgacataattcaatgtaatc 38134422  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 44172942 - 44172906
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatc 44172906  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 45319609 - 45319708
Alignment:
Q  163 aggatttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatg 262  Q
    ||||||||||||||| || || |||||||| ||||| ||||||||||||||||| || || ||||| ||||| || ||||| || || ||||| ||||||    
T  45319609 aggatttcaagtgtgccactccttgggaggaggaacgggttctggaatgggaactctactcatttcaaagatcagagaagaataccctgatcgaatgatg 45319708  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 1639495 - 1639532
Alignment:
Q  62 taataatactttgagaaaatgatataattcaatgtaat 99  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  1639495 taataatattttgagaaaatgacataattcaatgtaat 1639532  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 27733861 - 27733890
Alignment:
Q  71 tttgagaaaatgatataattcaatgtaatc 100  Q
    ||||||||||||||||||||||||||||||    
T  27733861 tttgagaaaatgatataattcaatgtaatc 27733890  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 34201100 - 34201063
Alignment:
Q  62 taataatactttgagaaaatgatataattcaatgtaat 99  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  34201100 taataataatttgagaaaatgacataattcaatgtaat 34201063  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 40150623 - 40150587
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatc 40150587  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 34409394 - 34409358
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  34409394 ataatacttcgagaaaatgacataattcaatgtaatc 34409358  T

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Target: scaffold0037 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 102912 - 102947
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaat 99  Q
    |||||| |||||||||||||||||||||||||||||    
T  102912 ataataatttgagaaaatgatataattcaatgtaat 102947  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 6299519 - 6299554
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaat 99  Q
    |||||| |||||||||||||||||||||||||||||    
T  6299519 ataataatttgagaaaatgatataattcaatgtaat 6299554  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 6306329 - 6306364
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaat 99  Q
    |||||| |||||||||||||||||||||||||||||    
T  6306329 ataataatttgagaaaatgatataattcaatgtaat 6306364  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 33135837 - 33135870
Alignment:
Q  62 taataatactttgagaaaatgatataattcaatg 95  Q
    |||||||| |||||||||||||||||||||||||    
T  33135837 taataataatttgagaaaatgatataattcaatg 33135870  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 1893422 - 1893390
Alignment:
Q  63 aataatactttgagaaaatgatataattcaatg 95  Q
    ||||||| |||||||||||||||||||||||||    
T  1893422 aataataatttgagaaaatgatataattcaatg 1893390  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 19602233 - 19602197
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19602233 ataataatttgagaaaatgatataattcagtgtaatc 19602197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 45453353 - 45453282
Alignment:
Q  191 ggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatg 262  Q
    ||||| |||||||||||||||||||||||| | ||||| ||||| ||||| || || || ||||| ||||||    
T  45453353 ggtggtactggttctggaatgggaacacttttgatttctaagatcagggaggaataccctgatcgaatgatg 45453282  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 3921673 - 3921710
Alignment:
Q  63 aataatactttgagaaaatgatataattcaatgtaatc 100  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  3921673 aataataatttgagaaaatgacataattcaatgtaatc 3921710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 2471264 - 2471228
Alignment:
Q  65 taatactttgagaaaatgatataattcaatgtaatct 101  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  2471264 taataatttgagaaaatgagataattcaatgtaatct 2471228  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 11571592 - 11571628
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11571592 ataataatttgagaaaatgacataattcaatgtaatc 11571628  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 240073 - 240037
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatc 240037  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 11596507 - 11596471
Alignment:
Q  64 ataatactttgagaaaatgatataattcaatgtaatc 100  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  11596507 ataataatttgagaaaatgacataattcaatgtaatc 11596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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