View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20317_low_8 (Length: 248)

Name: NF20317_low_8
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20317_low_8
NF20317_low_8
[»] chr8 (3 HSPs)
chr8 (19-62)||(12882939-12882982)
chr8 (81-142)||(12883046-12883106)
chr8 (83-118)||(25186252-25186287)
[»] chr3 (6 HSPs)
chr3 (83-138)||(37311728-37311783)
chr3 (82-138)||(53684023-53684079)
chr3 (83-138)||(23071897-23071952)
chr3 (84-138)||(53436157-53436211)
chr3 (172-218)||(53683935-53683981)
chr3 (86-138)||(48855496-48855548)
[»] chr4 (2 HSPs)
chr4 (94-138)||(3527965-3528009)
chr4 (85-138)||(8488636-8488689)
[»] chr1 (2 HSPs)
chr1 (82-138)||(37316207-37316263)
chr1 (86-126)||(29730915-29730955)
[»] chr7 (5 HSPs)
chr7 (83-138)||(42121404-42121459)
chr7 (82-138)||(17503539-17503595)
chr7 (82-138)||(17549619-17549675)
chr7 (82-138)||(26715149-26715205)
chr7 (86-138)||(37828419-37828471)
[»] chr5 (3 HSPs)
chr5 (83-138)||(12289088-12289143)
chr5 (83-133)||(30872965-30873015)
chr5 (85-138)||(141395-141448)
[»] chr2 (4 HSPs)
chr2 (83-138)||(12972712-12972767)
chr2 (99-138)||(43412890-43412929)
chr2 (85-138)||(34504262-34504315)
chr2 (86-138)||(2788508-2788560)


Alignment Details
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 12882939 - 12882982
Alignment:
Q  19 ttcagtatgcacttttcttgtcgtttacagcgatttttggttaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12882939 ttcagtatgcacttttcttgtcgtttacagcgatttttggttaa 12882982  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 12883046 - 12883106
Alignment:
Q  81 aacacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaattgatc 142  Q
    ||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  12883046 aacacatattaaccaatctaaaa-tagaaacattctcttgtattttgtgcattaaattgatc 12883106  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 25186287 - 25186252
Alignment:
Q  83 cacatgttaagcaatctaaaagtagaaacattctct 118  Q
    |||||||||||||| |||||||||||||||||||||    
T  25186287 cacatgttaagcaaactaaaagtagaaacattctct 25186252  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 37311783 - 37311728
Alignment:
Q  83 cacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||    
T  37311783 cacatgttaagcaacccaaaagtagaaacattctcttgtattttgtgcattcaatt 37311728  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 53684079 - 53684023
Alignment:
Q  82 acacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||| ||| ||||    
T  53684079 acacatgttaagcaattcaaaagtagaaatattctcttatattttgtgtattcaatt 53684023  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 23071897 - 23071952
Alignment:
Q  83 cacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||| | ||||||||||||||||| || |||||||| |||| ||||    
T  23071897 cacatgttaagcaacccaaaagtagaaacattcttttgtattttgtacatttaatt 23071952  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 53436157 - 53436211
Alignment:
Q  84 acatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||| |||||||||||| ||| ||||| |||||||| ||| ||||    
T  53436157 acatgttaagcaatttaaaagtagaaatattttcttaaattttgtgtatttaatt 53436211  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 53683981 - 53683935
Alignment:
Q  172 aacaaattattttcacttttcaatcattaacttgtaccttaagggca 218  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||    
T  53683981 aacaaattattttcacttttggctcattaacttgtgccttaagggca 53683935  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 48855496 - 48855548
Alignment:
Q  86 atgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||| ||| ||||    
T  48855496 atgttaagcaatccaaaagtagaaatattctcttgaattttgtgtattcaatt 48855548  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 3528009 - 3527965
Alignment:
Q  94 caatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
T  3528009 caatccaaaagtagaaacattctcttatattttgtgcattcaatt 3527965  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 8488636 - 8488689
Alignment:
Q  85 catgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||  |||||||||||||||||||| ||||||||| ||| ||||    
T  8488636 catgttaagcaattcaaaagtagaaacattctcttgtattttgtgtattcaatt 8488689  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 37316263 - 37316207
Alignment:
Q  82 acacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||| |||||| ||||    
T  37316263 acacatgttaagcaacctaaaagtaaaaacattatcttatattttatgcattcaatt 37316207  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 29730915 - 29730955
Alignment:
Q  86 atgttaagcaatctaaaagtagaaacattctcttatatttt 126  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  29730915 atgttaagcaatccaaaagtagaaacattctcttaaatttt 29730955  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 42121459 - 42121404
Alignment:
Q  83 cacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||| |||| ||||    
T  42121459 cacatgttaagcaacccaaaagtagaaacattctcttaaattttgtacattcaatt 42121404  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 17503539 - 17503595
Alignment:
Q  82 acacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||||||||||||| ||||||  |||||| || ||||| |||||||||||| ||||    
T  17503539 acacatgttaagcaacctaaaatgagaaactttttcttaaattttgtgcattcaatt 17503595  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 17549675 - 17549619
Alignment:
Q  82 acacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||||||||||||| ||||||  |||||| || ||||| |||||||||||| ||||    
T  17549675 acacatgttaagcaacctaaaatgagaaactttttcttaaattttgtgcattcaatt 17549619  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 26715205 - 26715149
Alignment:
Q  82 acacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||||||||||||||| |||| || ||| ||||||||  |||||||||||| ||||    
T  26715205 acacatgttaagcaatccaaaaataaaaatattctcttgaattttgtgcattcaatt 26715149  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 37828471 - 37828419
Alignment:
Q  86 atgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||| || ||||||| ||||| ||||||||| |||||||||||| ||||    
T  37828471 atgttaagaaacctaaaagaagaaatattctcttaaattttgtgcattcaatt 37828419  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 12289143 - 12289088
Alignment:
Q  83 cacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||||| ||||||||||| ||||||||  |||||||| ||| ||||    
T  12289143 cacatgttaagcaatccaaaagtagaaatattctcttgaattttgtgtattcaatt 12289088  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 30872965 - 30873015
Alignment:
Q  83 cacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcatt 133  Q
    ||||||||||||||| |||||||||||||||| ||||| ||| | ||||||    
T  30872965 cacatgttaagcaatttaaaagtagaaacattttcttaaattgtatgcatt 30873015  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 141448 - 141395
Alignment:
Q  85 catgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    ||||||||||||||  |||||||||| ||||||||  |||||||||||| ||||    
T  141448 catgttaagcaatcccaaagtagaaatattctcttgaattttgtgcattcaatt 141395  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 12972712 - 12972767
Alignment:
Q  83 cacatgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||||| ||||||||||  ||||||| | |||||||||||| ||||    
T  12972712 cacatgttaagcaatccaaaagtagaattattctctgaaattttgtgcattcaatt 12972767  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 43412929 - 43412890
Alignment:
Q  99 taaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  43412929 taaaagtagaaacattctcttaaattttgtgtattaaatt 43412890  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 34504315 - 34504262
Alignment:
Q  85 catgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||||||  ||||||| ||| ||||||||| |||||||||||| ||||    
T  34504315 catgttaagcaattcaaaagtaaaaatattctcttaaattttgtgcattcaatt 34504262  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 2788560 - 2788508
Alignment:
Q  86 atgttaagcaatctaaaagtagaaacattctcttatattttgtgcattaaatt 138  Q
    |||||||||  |||||||||||||||||||| ||| | |||||||||| ||||    
T  2788560 atgttaagctgtctaaaagtagaaacattctattaaagtttgtgcattcaatt 2788508  T

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