View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20317_low_9 (Length: 244)
Name: NF20317_low_9
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20317_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 43700806 - 43700968
Alignment:
| Q |
16 |
caaggaacaaaaacataaccaacgctgtaacattactattatttgagtactccatggatgaaagtttgaagcttaattgatttaattgatttttcacctc |
115 |
Q |
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| T |
43700806 |
caaggaacaaaaacataacaaacgctgtaacattactattatttgagtactccatggatgaaagtttgaagcttaa---------ttgatttttcacctc |
43700896 |
T |
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| Q |
116 |
agtttcagttgtatctaactgcatcaacatatatctatttatacaaagggaaaacagttgtttaaagcccta |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43700897 |
agtttcagttgtatctaactgcatcaacatatatctatttatacaaagggaaaacagttgtttaaagcccta |
43700968 |
T |
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