View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20318_low_1 (Length: 478)
Name: NF20318_low_1
Description: NF20318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20318_low_1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 23692803 - 23693236
Alignment:
| Q |
1 |
atcttgtcataaatggccacagaaattatcattcctaaggcagcaactgtgaaaattgaagctggtggaagttcaaacctttcacctatttttctgttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
23692803 |
atcttgtcataaatggccacagaaattatcattcctaaggcagcaactgtgaaaattgaagctggtggaagttcaaacctttcacctatctttctattca |
23692902 |
T |
|
| Q |
101 |
ttatagcactttgtttaatgaagaatgttgatgtttgtgctacacttattccaaatggtatagtgaatacccaaattggaatcatattgattataagctt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23692903 |
ttatagcactttgtttgatgaagaatgttgatgtttgtgctacacttattccaaatggtatagtgaatacccaaattggtatcatattgattataagctt |
23693002 |
T |
|
| Q |
201 |
catttcttcaactgtagttacagttgttagcttccatggactttgcttctctattgaatttccatcgttttcaattatagctgccttgtcaagaaatctg |
300 |
Q |
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| T |
23693003 |
catttcttcaactgtagttacagttgttagcttccatggactttgcttctctattgaatttccatcgttttcaattatagctgccttgtcaagaaatctg |
23693102 |
T |
|
| Q |
301 |
aaaacaattcatagaagttaatgttgctagcacttgaatgagcaaatagacaaattagtcctcaaaatcataagcatcgatcaaaaaatagtcattgttt |
400 |
Q |
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| T |
23693103 |
aaaacaattcatacaagttagtgttgctagcacttgaatgcgcgaatagacaaattagtcctcaaaattgtaagcattgatc--aaaatagtcattgatt |
23693200 |
T |
|
| Q |
401 |
tttgtgaattagcaaatacatttttggaattgttaa |
436 |
Q |
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| T |
23693201 |
tttgtgaattagcaaatacattcttggaattgttaa |
23693236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 304
Target Start/End: Original strand, 6146001 - 6146301
Alignment:
| Q |
4 |
ttgtcataaatggccacagaaattatcattcctaaggcagcaactgtgaaaattgaagctggtggaagttcaaacctttcacctatttttctgttcatta |
103 |
Q |
| |
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||||| ||||| || |||||||||||||| || | || | || |||||||||||||| ||||||| || || | | ||||||||||| ||||||| |
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| T |
6146001 |
ttgtcgtaaattgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagcgggtggaatctcgaaaccatgtcctatttttctattcatta |
6146100 |
T |
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| Q |
104 |
tagcactttgtttaatgaagaatgttgatgtttgtgctacacttattccaaatggtatagtgaatacccaaattggaatcatattgattataagcttcat |
203 |
Q |
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|| || ||| || || ||||| |||||||||||||| ||| ||||||||||||| ||| |||| ||||||||| ||||| ||||| ||||||||||| |
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| T |
6146101 |
tattaccttgcttgataaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattgggatcatgttgatcataagcttcat |
6146200 |
T |
|
| Q |
204 |
ttcttcaactgtagttacagttgttagcttccatggactttgcttctctattgaatttccatcgttttcaattatagctgccttgtcaagaaatctgaaa |
303 |
Q |
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|||||||||| |||| || |||| ||| |||||||||||||| | || | | ||||||| || |||||| ||| ||||||||||||| |||||||||| |
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| T |
6146201 |
ttcttcaactctagtgactgttgctagtttccatggactttgttcctttgctaaatttccttcactttcaactattgctgccttgtcaaaaaatctgaaa |
6146300 |
T |
|
| Q |
304 |
a |
304 |
Q |
| |
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| |
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|
| T |
6146301 |
a |
6146301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 121905 - 121938
Alignment:
| Q |
352 |
aaattagtcctcaaaatcataagcatcgatcaaa |
385 |
Q |
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| T |
121905 |
aaattagtcctcaaaatcataagcatcgatcaaa |
121938 |
T |
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Back To:
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