View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20318_low_2 (Length: 474)

Name: NF20318_low_2
Description: NF20318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20318_low_2
NF20318_low_2
[»] scaffold0400 (3 HSPs)
scaffold0400 (10-459)||(13635-14084)
scaffold0400 (294-458)||(7336-7500)
scaffold0400 (52-150)||(7571-7669)
[»] scaffold0365 (3 HSPs)
scaffold0365 (10-459)||(14278-14727)
scaffold0365 (294-458)||(7980-8144)
scaffold0365 (52-150)||(8215-8313)
[»] chr1 (14 HSPs)
chr1 (10-459)||(14531542-14532010)
chr1 (15-459)||(15037866-15038308)
chr1 (15-459)||(15041434-15041869)
chr1 (15-459)||(15011847-15012298)
chr1 (15-459)||(14521447-14521889)
chr1 (10-458)||(15033300-15033734)
chr1 (15-459)||(15002954-15003410)
chr1 (293-455)||(15017966-15018128)
chr1 (52-150)||(14468896-14468994)
chr1 (52-151)||(14505147-14505246)
chr1 (309-458)||(14468651-14468803)
chr1 (45-150)||(14483893-14483998)
chr1 (363-455)||(14483602-14483694)
chr1 (294-458)||(14504830-14504997)
[»] chr8 (4 HSPs)
chr8 (52-147)||(17028971-17029066)
chr8 (52-147)||(17559407-17559502)
chr8 (309-458)||(17028688-17028837)
chr8 (309-458)||(17559124-17559273)
[»] chr7 (21 HSPs)
chr7 (45-150)||(16173745-16173850)
chr7 (53-150)||(17824966-17825063)
chr7 (51-150)||(15664174-15664273)
chr7 (304-458)||(15676187-15676341)
chr7 (48-150)||(14607056-14607158)
chr7 (48-150)||(16026230-16026332)
chr7 (309-458)||(15664357-15664506)
chr7 (309-458)||(17849376-17849525)
chr7 (51-150)||(15676004-15676103)
chr7 (48-150)||(16103985-16104087)
chr7 (302-458)||(17825206-17825362)
chr7 (381-458)||(14606752-14606829)
chr7 (381-458)||(16025929-16026006)
chr7 (381-458)||(16173405-16173482)
chr7 (381-458)||(16103737-16103814)
chr7 (65-137)||(17849671-17849743)
chr7 (90-134)||(31059309-31059353)
chr7 (90-134)||(31160127-31160171)
chr7 (90-134)||(31184854-31184898)
chr7 (90-134)||(31242230-31242274)
chr7 (90-134)||(31141309-31141353)
[»] scaffold0289 (3 HSPs)
scaffold0289 (312-458)||(13519-13665)
scaffold0289 (45-147)||(13323-13424)
scaffold0289 (409-458)||(4783-4832)


Alignment Details
Target: scaffold0400 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 14084 - 13635
Alignment:
Q  10 ataatactttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacat 109  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||    
T  14084 ataacactttgtgaagcttgctgccacaaagaagttacaacatctccagggtgctttccataaagtatttccaaggttaatatcccaaaactatacacat 13985  T
Q  110 cacatttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaagagttatcacatgaaaaattggattctgtaaaaatagcatgatatgt 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  13984 cacatttctcatttacttccattgtgtatgcaagttctgtggaaatttaaaaagagttatcacgtgaaaaatatgattctgtaaaaatagcatgatatgt 13885  T
Q  210 agatttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaagaaaaggaattga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13884 agatttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaagaaaaggaattga 13785  T
Q  310 cctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacgt 409  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  13784 cctggagctgcatatccaaaggtgcctgcaaaagaagtcatgttggatgaattgggatttaggaacttggatgttccgaagtctgagacatgagctacat 13685  T
Q  410 attccaaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13684 attccaaatccaaaataacattcttgctggatatatctcgatgaacaata 13635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 294 - 458
Target Start/End: Complemental strand, 7500 - 7336
Alignment:
Q  294 aaagaaaaggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtct 393  Q
    ||||||||| |||| ||||||||| |||||||||||||| ||| ||||| | |||  |||||| |||| |||||| || ||||||| |||||| ||||||    
T  7500 aaagaaaagaaattaacctggagcagcatatccaaaggttcctacaaaacaggtccaattggaagaatcgggattaagaaacttggctgttccgaagtct 7401  T
Q  394 gagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  7400 gagacatgagccacatattccaaatccaaaacaacattcttgctggatatatcacgatgaacaat 7336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 7669 - 7571
Alignment:
Q  52 tctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttctgta 150  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  7669 tctccaggatgctttccaaaaagtatttccaaggttaatatcccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttctgta 7571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 14727 - 14278
Alignment:
Q  10 ataatactttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacat 109  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||    
T  14727 ataacactttgtgaagcttgctgccacaaagaagttacaacatctccagggtgctttccataaagtatttccaaggttaatatcccaaaactatacacat 14628  T
Q  110 cacatttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaagagttatcacatgaaaaattggattctgtaaaaatagcatgatatgt 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  14627 cacatttctcatttacttccattgtgtatgcaagttctgtggaaatttaaaaagagttatcacgtgaaaaatatgattctgtaaaaatagcatgatatgt 14528  T
Q  210 agatttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaagaaaaggaattga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14527 agatttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaagaaaaggaattga 14428  T
Q  310 cctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacgt 409  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  14427 cctggagctgcatatccaaaggtgcctgcaaaagaagtcatgttggatgaattgggatttaggaacttggatgttccgaagtctgagacatgagctacat 14328  T
Q  410 attccaaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14327 attccaaatccaaaataacattcttgctggatatatctcgatgaacaata 14278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 294 - 458
Target Start/End: Complemental strand, 8144 - 7980
Alignment:
Q  294 aaagaaaaggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtct 393  Q
    ||||||||| |||| ||||||||| |||||||||||||| ||| ||||| | |||  |||||| |||| |||||| || ||||||| |||||| ||||||    
T  8144 aaagaaaagaaattaacctggagcagcatatccaaaggttcctacaaaacaggtccaattggaagaatcgggattaagaaacttggctgttccgaagtct 8045  T
Q  394 gagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  8044 gagacatgagccacatattccaaatccaaaacaacattcttgctggatatatcacgatgaacaat 7980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 8313 - 8215
Alignment:
Q  52 tctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttctgta 150  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  8313 tctccaggatgctttccaaaaagtatttccaaggttaatatcccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttctgta 8215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 459
Target Start/End: Original strand, 14531542 - 14532010
Alignment:
Q  10 ataatactttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacat 109  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||| ||||    
T  14531542 ataacactttgtgaaggttgcttccacaaagaagttacaacatctccagggtgttttccaaaaagtatttccaaggtcaatatcccaaaactatacacat 14531641  T
Q  110 cacatttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaa-gagttatcacatgaaaaattggattctgtaaaaatagcatgatatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||     
T  14531642 cacatttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaaagagttatcacgtgaaaaataggattctgtaaaaatagcattatata 14531741  T
Q  209 taga--------------------tttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaatta 288  Q
    || |                    || |||||| | ||||||||||||||||||||||| ||| |||  ||||| |||||| |||||||||||| |||||    
T  14531742 taaaatctagaaaatctttagtacttacatagtcgcgaaataattacattttacatgtaggtattaattatgaa-tacaaaatattataacctt-aatta 14531839  T
Q  289 atataaaagaaaaggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |    
T  14531840 atataaaagaaaaggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgagttgggattcagaaacttggatgttccga 14531939  T
Q  389 agtctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14531940 agtctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaata 14532010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 15038308 - 15037866
Alignment:
Q  15 actttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacat 114  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||    
T  15038308 actttgtgaaggttgctgccacaaataagttacaatatctccagggtgctttccaaaaagtatttccaaggttaatatcccaaaaccatacacatcacat 15038209  T
Q  115 ttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaagagtt-atcacatgaaaaattggattctgtaaaaatagcatgatatgtagat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||| ||||||  |||| | | ||||| ||||||||    
T  15038208 ttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaagattttatcatgtgaaaaataggattccataaacaaaacatgaaatgtagat 15038109  T
Q  214 ttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaagaaaaggaattgacctg 313  Q
    |  | | ||||||||||||| |||||||| ||||||||||||| || || |||||| ||||||||| ||||||||||||||||  || ||||||||||||    
T  15038108 tagacaattgtgaaataatttcattttacctgtaagtactaaagataaagtacaaaatattataac-tttaattaatataaaa--aagggaattgacctg 15038012  T
Q  314 gagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacgtattc 413  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  15038011 gagcagcatatccaaaggtgcctgcaaaagaagacatattggatgagttgggatttagaaacttagatgttccaaagtctgagacatgagctacatattc 15037912  T
Q  414 caaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  15037911 catatccaaaataacattcttgctggatatatctcgatgaacaata 15037866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 15041869 - 15041434
Alignment:
Q  15 actttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacat 114  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  15041869 actttgtgaaggttgttgccacaaataagttacaatatctccagggtgctttccaaaatgtatttccaaggttaataccccaaaactatacacatcacat 15041770  T
Q  115 ttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaagagttatcacatgaaaaattggattctgtaaaaatagcatgatatgtagatt 214  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||| ||||||  |||| | | ||||| |||||||||    
T  15041769 ttctca-ttacttccattgtgtatgcaagttctgtagaaatttaaaaagatttatcatgtgaataataggattccataaacaaaacatgaaatgtagatt 15041671  T
Q  215 tcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaagaaaaggaattgacctgg 314  Q
    | | | |||| |||||||||||||||||||||||||       || | ||||||| |||||||||| ||||||||||||||  ||| |||||| ||||||    
T  15041670 taacaattgtaaaataattacattttacatgtaagt-------ataagctacaaaatattataacc-ttaattaatataaa--aaagggaattcacctgg 15041581  T
Q  315 agctgcatatccaaaggt--gcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacgtatt 412  Q
     || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||    
T  15041580 tgcagcatatccaaaggtgcgcctgcaaaagaagtcatattggatgaattgggatttaaaaacttagatgttccaaagtctgagacatgagctacatatt 15041481  T
Q  413 ccaaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15041480 ccaaatccaaaataacattcttgctggatatatctcgatgaacaata 15041434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 15012298 - 15011847
Alignment:
Q  15 actttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacat 114  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||    
T  15012298 actttgtgaaggttgttgccacaaataagttacaatatctccagggtgctttccaaaaagtatttccaaggttaatatcccaaaactatatacatcgcat 15012199  T
Q  115 ttctcatttacttccattgtgtatgcaagttctgtagaaatttaaa-aagagttatcacatgaaaaattggattctgtaaaaatagcatgatatgtagat 213  Q
    |||| ||||||||||||||||||||||||||||||| | ||| ||| ||||||||||   || |||||   ||||  |||| | | ||||| ||||||||    
T  15012198 ttcttatttacttccattgtgtatgcaagttctgtaaacattcaaagaagagttatcgtgtgtaaaatataattccataaacaaaacatgaaatgtagat 15012099  T
Q  214 ttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaa--------gaaaaggaa 305  Q
    |  | | |||||  |||| |  ||||||||||||| ||||||| || |||||||||| ||||||||||| |||||||||||||        |||||||||    
T  15012098 tagacaattgtgttataactctattttacatgtaactactaaagataaactacaaat-attataacctt-aattaatataaaaaaaagaatgaaaaggaa 15012001  T
Q  306 ttgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagct 405  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  15012000 ttgacctggagcggcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttagaaacttagatgttccaaagtctgagacatgagct 15011901  T
Q  406 acgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15011900 acatattccaaatccaaaataacattcttgctggatatatctcgatgaacaata 15011847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 459
Target Start/End: Original strand, 14521447 - 14521889
Alignment:
Q  15 actttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacat 114  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  ||||||||||| |||||||||    
T  14521447 actttttgaagattgttgccacaaagaagttacaacatctccagggtgctttccgaaaagtatttccaaggttaaaatcccaaaactatacacatcacat 14521546  T
Q  115 ttctcatttacttccattgtgtatgcaagttctgtagaaatttaaa-aagagttatcacatgaaaaattggattctgtaaaaatagcatgatatgtagat 213  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||   |||||||| || ||| ||||| | | ||||| || ||||     
T  14521547 ttctcatttacttccattgtgtatgcaagttctgtaaacatttaaagaagagttatcgtgtgaaaaatagg-ttccgtaaataaa-catgaaatatagac 14521644  T
Q  214 ttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaa-agaaaaggaattgacct 312  Q
    |  | | |||||||||| |||||||||||| ||||  |||||| || ||||| ||||  | |||| ||| | |||||||||| | ||||||| |||||||    
T  14521645 tagacaattgtgaaatagttacattttacaagtaaacactaaagataaactaaaaatgct-ataaactt-agttaatataaacaaaaaaggagttgacct 14521742  T
Q  313 ggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacgtatt 412  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||    
T  14521743 ggagcagcatatccaaaggtgcctgcaaaagaagtcatattcgatgaattgggatttagaaacttagatgttccaaagtctgagacatgagctacacatt 14521842  T
Q  413 ccaaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14521843 ccaaatccaaaataacattcttgctggatatatctcgatgaacaata 14521889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 458
Target Start/End: Complemental strand, 15033734 - 15033300
Alignment:
Q  10 ataatactttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacat 109  Q
    |||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||| | ||||    
T  15033734 ataacactttgtgaaggttgttgccacaaataagttacaatatctccagggtgctttccaaaaagtatttccaaggttaatatcccaaaactaaacacat 15033635  T
Q  110 cacatttctcatttacttccattgtgtatgcaagttctgtagaaatttaaaaagagttatcacatgaaaaattggattctgtaaaa-atagcatgatatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||    |||||||| ||||| || |||| | | ||| | |||    
T  15033634 cacatttctcatttacttccattgtgtatgcaagttctgtagaaatttacaaatatttatg---tgaaaaataggatt-tgaaaaacaaaacattaaatg 15033539  T
Q  209 tagatttcatagttgtgaaataattacattttacatgtaa-gtactaaaaatgaactacaaattattataacctttaattaatataaaagaaaaggaatt 307  Q
    |||||||       |||||||||||| ||||||||||||| |||||||| || ||||||||| |||| ||||||| |||||||  |||| |    |||||    
T  15033538 tagattt-------gtgaaataattagattttacatgtaaagtactaaagataaactacaaaatattttaacctt-aattaatgaaaaaaa----gaatt 15033451  T
Q  308 gacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctac 407  Q
     ||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  15033450 cacctggagcagtatatccaaaagtgcctgcaaaagaagtcatattggatgaattgggattgagaaacttagatgttccaaagtctgagacatgagctac 15033351  T
Q  408 gtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
     ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  15033350 atattccaaatccaaaatgacattcttgctggatatatcgcgatgaacaat 15033300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 15003410 - 15002954
Alignment:
Q  15 actttgtgaaggttgctgccacaaagaagttacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacat 114  Q
    |||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||  ||||||||| | |||||||||    
T  15003410 actttgcgaaggttgttgccacaaataagttacaatatctccagggtgctttccaaaaagcatttccaaggttaatatcccaaaactaaacacatcacat 15003311  T
Q  115 ttctcatttacttccattgtgtatgcaagttctgtagaaatttaaa-aagagttatcacatgaaaaattggattctgtaaaaatagcatgatatgtagat 213  Q
    |||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||   || |||||   ||||  |||| | | ||||| |||||||     
T  15003310 ttctcatttacttccattgtgtatgcaagttctgtaaacattcaaagaagagttatcgtgtgtaaaatataattccataaacaaaacatgaaatgtagag 15003211  T
Q  214 ttcatagttgtgaaataattacattttacatgtaagtactaaaaatgaactacaaattattataacctttaattaatataaaa-------------gaaa 300  Q
    |  | | |||||  |||| |  ||||||||||||| ||||||| || |||||||||| ||||||||||| |||||||||||||             ||||    
T  15003210 tagacaattgtgttataactctattttacatgtaactactaaagataaactacaaat-attataacctt-aattaatataaaaaaaaaaaaagaatgaaa 15003113  T
Q  301 aggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacat 400  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||    
T  15003112 aggaattgacctggagcagcatatccaaaggtgcctgcaaaagaagtcatattggacgaattgggatttagaaacttagatgttccaaaatctgagacat 15003013  T
Q  401 gagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaata 459  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15003012 gagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaacaata 15002954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 293 - 455
Target Start/End: Complemental strand, 15018128 - 15017966
Alignment:
Q  293 aaaagaaaaggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtc 392  Q
    |||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||    
T  15018128 aaaaaaaaagggactgacctggagcagcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttagaaacttagatgttccaaaatc 15018029  T
Q  393 tgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaac 455  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15018028 tgagacatgagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaac 15017966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 14468994 - 14468896
Alignment:
Q  52 tctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttctgta 150  Q
    |||||||| || ||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  14468994 tctccaggatgttttccaagaagcatttccaaggttaatactccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttctgta 14468896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 14505246 - 14505147
Alignment:
Q  52 tctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttctgtag 151  Q
    |||||||| || ||||||| ||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||    
T  14505246 tctccaggatgttttccaagaagtatttccaggcttaatactccaaaactatacacatcacacttctcatttacttccattgtatatgcaagttctgtag 14505147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 458
Target Start/End: Complemental strand, 14468803 - 14468651
Alignment:
Q  309 acctggagctgcatatccaaaggtgcctgcaaaa---gaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagct 405  Q
    ||||||||| |  ||||||||||||||| |||||   || |||  |||||| | ||||||||| || ||||| | |||||| || ||||||||||||||     
T  14468803 acctggagcagtgtatccaaaggtgcctacaaaattagaggtccaattggaagcattgggattgagaaacttagctgttccgaaatctgagacatgagcc 14468704  T
Q  406 acgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    || |||||||||||||||| || |||||| ||||||||||| |||||||||||    
T  14468703 acatattccaaatccaaaacaatattcttactggatatatcgcgatgaacaat 14468651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 14483998 - 14483893
Alignment:
Q  45 tacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagt 144  Q
    ||||| ||||||||| || ||||||| ||||||||||| | ||||||||||||||||||| |||||||| ||||| ||||| |  |||||||||| ||||    
T  14483998 tacaatatctccaggatgttttccaagaagtatttccaggcttaatactccaaaactatacacatcacacttctcgtttacgtttattgtgtatgtaagt 14483899  T
Q  145 tctgta 150  Q
    ||||||    
T  14483898 tctgta 14483893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 455
Target Start/End: Complemental strand, 14483694 - 14483602
Alignment:
Q  363 gggatttaggaacttggatgttccaaagtctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaac 455  Q
    |||||| || ||||| | |||||| || |||||||||||||| || |||||||||||||||| || |||||| ||||||||||| ||||||||    
T  14483694 gggattaagaaacttagctgttccgaaatctgagacatgagccacatattccaaatccaaaacaatattcttactggatatatcgcgatgaac 14483602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 458
Target Start/End: Complemental strand, 14504997 - 14504830
Alignment:
Q  294 aaagaaaaggaattgacctggagctgcatatccaaaggtgcctgcaaa---agaagtcatattggatgaattgggatttaggaacttggatgttccaaag 390  Q
    ||||||| | |||| ||||||||| |  |||||||| |||||| ||||   ||| |||  |||||| | || |||||| || ||||| | |||||| ||     
T  14504997 aaagaaaggaaattaacctggagcagtgtatccaaacgtgcctacaaagttagaggtccaattggaagcatcgggattaagaaacttagctgttccgaaa 14504898  T
Q  391 tctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    || ||||||||||| || |||||||||||||||| || |||||| || |||||||| |||||||||||    
T  14504897 tccgagacatgagccacatattccaaatccaaaacaatattcttactcgatatatcgcgatgaacaat 14504830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 17029066 - 17028971
Alignment:
Q  52 tctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttct 147  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  17029066 tctccaggatgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctcatttacttccattgtgtatgcaagttct 17028971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 17559502 - 17559407
Alignment:
Q  52 tctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttct 147  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  17559502 tctccaggatgctttccaaaaagtatttccaaggttaataccccgaaactatacacatcacatctctcatttacttccattgtgtatgcaagttct 17559407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 458
Target Start/End: Complemental strand, 17028837 - 17028688
Alignment:
Q  309 acctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacg 408  Q
    ||||||||| |  ||||||||||||||| ||||||  |||  |||||| |||| | |||| || ||||| | |||||| || |||||||||||||| ||     
T  17028837 acctggagcagtgtatccaaaggtgcctacaaaagcggtccaattggaagaatcgagattaagaaacttagctgttccgaaatctgagacatgagcaaca 17028738  T
Q  409 tattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  17028737 tattccaaatccaaaacaacattcttactggatatatcacgatgaacaat 17028688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 458
Target Start/End: Complemental strand, 17559273 - 17559124
Alignment:
Q  309 acctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacg 408  Q
    ||||||||| |  ||||||||||||||| ||||||  |||  |||||| |||| | |||| || ||||| | |||||| || |||||||||||||| ||     
T  17559273 acctggagcagtgtatccaaaggtgcctacaaaagcggtccaattggaagaatcgagattaagaaacttagctgttccgaaatctgagacatgagcaaca 17559174  T
Q  409 tattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  17559173 tattccaaatccaaaacaacattcttactggatatatcacgatgaacaat 17559124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 16173850 - 16173745
Alignment:
Q  45 tacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagt 144  Q
    ||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||| |||||||| |||||  |||||| | ||||||||||||||    
T  16173850 tacaacatctccaggatgttttccaaacagtatttccaatgctaatactccaaaactatacacatcacacttctcggttactttcgttgtgtatgcaagt 16173751  T
Q  145 tctgta 150  Q
    ||||||    
T  16173750 tctgta 16173745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 17824966 - 17825063
Alignment:
Q  53 ctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttctgta 150  Q
    |||||||||| |||||||||||| ||||||| | |||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||  |||||||    
T  17824966 ctccagggtgttttccaaaaagtttttccaatgctaataccccaaaactatacacatcacatttctcattcacttgcattgtgtatgcatattctgta 17825063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 15664174 - 15664273
Alignment:
Q  51 atctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttctgta 150  Q
    |||||| ||||| |||||| |  |||||||||| |  ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  15664174 atctcctgggtgttttccatatggtatttccaatgccaataccccaaaactatacacatcacacttctcatttacttccattgtgtatgcaagttctgta 15664273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 458
Target Start/End: Original strand, 15676187 - 15676341
Alignment:
Q  304 aattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgag 403  Q
    |||| ||||||||| ||||||||| |||| |||||||| || ||||  |||| |||||| |||||||| | ||| | | ||||||||||||||||| |||    
T  15676187 aattaacctggagcagcatatccataggtacctgcaaatgatgtcaagttggttgaattaggatttagaagcttagctattccaaagtctgagacacgag 15676286  T
Q  404 ctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    | || ||||| |||||||  |  | ||||||||| ||||||||||||||||||||    
T  15676287 ccacatattctaaatccagtaggatattcttgcttgatatatctcgatgaacaat 15676341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 14607158 - 14607056
Alignment:
Q  48 aacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttct 147  Q
    ||||||||| || || |||||||||||||||||||| | ||||||||||||||| || |||||||| ||||| || ||||   |||||||||||||||||    
T  14607158 aacatctccgggatgttttccaaaaagtatttccaatgctaatactccaaaactgtacacatcacacttctcgttcacttttgttgtgtatgcaagttct 14607059  T
Q  148 gta 150  Q
    |||    
T  14607058 gta 14607056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 16026332 - 16026230
Alignment:
Q  48 aacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttct 147  Q
    ||||||||| || || |||||||||||||||||||| | ||||||||||||||| || |||||||| ||||| || ||||   |||||||||||||||||    
T  16026332 aacatctccgggatgttttccaaaaagtatttccaatgctaatactccaaaactgtacacatcacacttctcgttcacttttgttgtgtatgcaagttct 16026233  T
Q  148 gta 150  Q
    |||    
T  16026232 gta 16026230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 458
Target Start/End: Original strand, 15664357 - 15664506
Alignment:
Q  309 acctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacg 408  Q
    ||||||||  ||||||||| ||||||||||||| || |||  ||||  |||||| ||||| || | ||| |  ||||||||||||||||||  ||| ||     
T  15664357 acctggagaagcatatccataggtgcctgcaaatgaggtccaattgtctgaattaggattaagaagcttagccgttccaaagtctgagacacaagccaca 15664456  T
Q  409 tattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    ||||| ||||||| || || ||||||||| ||||||||||||||||||||    
T  15664457 tattctaaatccagaagaatattcttgcttgatatatctcgatgaacaat 15664506  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 458
Target Start/End: Complemental strand, 17849525 - 17849376
Alignment:
Q  309 acctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacg 408  Q
    ||||||||| |||||||||| ||| |||||||| || |||  ||||| |||||  |||||||| |  || | | |||||||||| ||||||||||||||     
T  17849525 acctggagcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggatttagaagtttagctattccaaagtcagagacatgagctaca 17849426  T
Q  409 tattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    |||||||| || | ||  | ||||||||| ||||||||||||||||||||    
T  17849425 tattccaagtctagaagtatattcttgcttgatatatctcgatgaacaat 17849376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 15676004 - 15676103
Alignment:
Q  51 atctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttctgta 150  Q
    |||||| ||||| |||||| | ||||||||||| | |||||  ||||||||||| |||||||| ||| |||| ||||||||||||||||||| |||||||    
T  15676004 atctcccgggtgttttccatatagtatttccaatgctaatatcccaaaactatacacatcacacttcacattcacttccattgtgtatgcaaattctgta 15676103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 16104087 - 16103985
Alignment:
Q  48 aacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagttct 147  Q
    ||||||||| || || |||||||||||| ||||||| | |||||| || |||||||| |||||||| |||||||| ||||   |||||||||||||||||    
T  16104087 aacatctccgggatgttttccaaaaagtgtttccaatgctaataccccgaaactatacacatcacacttctcattcacttttgttgtgtatgcaagttct 16103988  T
Q  148 gta 150  Q
    |||    
T  16103987 gta 16103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 458
Target Start/End: Original strand, 17825206 - 17825362
Alignment:
Q  302 ggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatg 401  Q
    |||||| |||||| || |||||||||| ||| |||||||| || |||  ||||| |||||  ||||| || | ||| | | |||||||||| ||||||||    
T  17825206 ggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatg 17825305  T
Q  402 agctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    ||| || ||||||||||  | ||  | ||||||||| ||||||||||||||||||||    
T  17825306 agccacatattccaaatttagaagtatattcttgcttgatatatctcgatgaacaat 17825362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 458
Target Start/End: Complemental strand, 14606829 - 14606752
Alignment:
Q  381 tgttccaaagtctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    |||||||||||| ||||||||| | ||  ||||| |||||| || || ||||||||| ||||||||||||||||||||    
T  14606829 tgttccaaagtcagagacatgacccacacattccgaatccagaagaatattcttgcttgatatatctcgatgaacaat 14606752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 458
Target Start/End: Complemental strand, 16026006 - 16025929
Alignment:
Q  381 tgttccaaagtctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    |||||||||||| ||||||||| | ||  ||||| |||||| || || ||||||||| ||||||||||||||||||||    
T  16026006 tgttccaaagtcagagacatgacccacacattccgaatccagaagaatattcttgcttgatatatctcgatgaacaat 16025929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 458
Target Start/End: Complemental strand, 16173482 - 16173405
Alignment:
Q  381 tgttccaaagtctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    |||||||||||| ||||||||||| ||  ||||  |||||| || || ||||||||| ||||||||||||||||||||    
T  16173482 tgttccaaagtcagagacatgagccacacattcggaatccagaagaatattcttgcttgatatatctcgatgaacaat 16173405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 458
Target Start/End: Complemental strand, 16103814 - 16103737
Alignment:
Q  381 tgttccaaagtctgagacatgagctacgtattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    |||||||||||| |||||| |||| || ||||| ||||||| || || ||||||||| ||||||||||  ||||||||    
T  16103814 tgttccaaagtccgagacacgagccacatattctaaatccagaagaatattcttgcttgatatatctctgtgaacaat 16103737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 17849743 - 17849671
Alignment:
Q  65 ttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgta 137  Q
    ||||||| ||||||||||| |  || ||||| |||||||| |||||||| |||||||| |||| |||||||||    
T  17849743 ttccaaagagtatttccaatgccaacactccgaaactatatacatcacacttctcattcactttcattgtgta 17849671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 31059353 - 31059309
Alignment:
Q  90 tactccaaaactatagacatcacatttctcatttacttccattgt 134  Q
    |||||||||||| || ||||||||||||||||| |||||||||||    
T  31059353 tactccaaaactgtatacatcacatttctcattcacttccattgt 31059309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 31160171 - 31160127
Alignment:
Q  90 tactccaaaactatagacatcacatttctcatttacttccattgt 134  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||    
T  31160171 tactccaaaactatatacatcacatttctcattcacctccattgt 31160127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 31184898 - 31184854
Alignment:
Q  90 tactccaaaactatagacatcacatttctcatttacttccattgt 134  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||    
T  31184898 tactccaaaactgtagacatcacatttctcattcactttcattgt 31184854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 31242274 - 31242230
Alignment:
Q  90 tactccaaaactatagacatcacatttctcatttacttccattgt 134  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||    
T  31242274 tactccaaaactatatacatcacatttctcattcacctccattgt 31242230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 31141353 - 31141309
Alignment:
Q  90 tactccaaaactatagacatcacatttctcatttacttccattgt 134  Q
    |||||||||||| || ||||||||||||||||| || ||||||||    
T  31141353 tactccaaaactgtatacatcacatttctcattcacctccattgt 31141309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 458
Target Start/End: Original strand, 13519 - 13665
Alignment:
Q  312 tggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttaggaacttggatgttccaaagtctgagacatgagctacgtat 411  Q
    |||||| ||||||||| ||||||||||||| || |||  ||||  |||||| | ||  || | ||| | |||||||||||| |||||| |||| || |||    
T  13519 tggagcagcatatccataggtgcctgcaaatgaggtccaattgtctgaattagcatcaagaagcttagctgttccaaagtccgagacacgagccacatat 13618  T
Q  412 tccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    || ||||||| || || ||||||||| ||||||||||||||||||||    
T  13619 tctaaatccagaagaatattcttgcttgatatatctcgatgaacaat 13665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 13323 - 13424
Alignment:
Q  45 tacaacatctccagggtgctttccaaaaagtatttccaaggttaatactccaaaactatagacatcacatttctcatttacttccattgtgtatgcaagt 144  Q
    ||||| |||||||||||  |||||| | |||||||||| | | ||||| ||||||||||| |||||||| |||||||| |||||||| |||||||||| |    
T  13323 tacaatatctccagggttttttccatatagtatttccatgct-aataccccaaaactatacacatcacacttctcattcacttccatagtgtatgcaaat 13421  T
Q  145 tct 147  Q
    |||    
T  13422 tct 13424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 4783 - 4832
Alignment:
Q  409 tattccaaatccaaaataacattcttgctggatatatctcgatgaacaat 458  Q
    ||||| ||||||| || || ||||||||| ||||||||||||||||||||    
T  4783 tattctaaatccagaagaatattcttgcttgatatatctcgatgaacaat 4832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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