View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20318_low_3 (Length: 255)
Name: NF20318_low_3
Description: NF20318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20318_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 6157814 - 6157883
Alignment:
| Q |
186 |
gatttacttgaatttgaaaaccattatttatcggtacctgatgtgtttgttcctccattctttttccaac |
255 |
Q |
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| T |
6157814 |
gatttacttgaatttgaaaaccattatttatcggtacctgatgtgtttgttcctccattctttttccaac |
6157883 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 6157647 - 6157710
Alignment:
| Q |
19 |
ccaataaccaaaatcatcattctttccaaacaaaacaaaaacatatagtaattactaaggtaac |
82 |
Q |
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| T |
6157647 |
ccaataaccaaaatcatcattctttccaaacaaaacaaaaacatatagtaattactaaggtaac |
6157710 |
T |
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