View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20318_low_4 (Length: 215)
Name: NF20318_low_4
Description: NF20318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20318_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 39606662 - 39606877
Alignment:
| Q |
1 |
ttccatttctgtcaaggcttctaaaataataattaaggggtatttggttcaagtctgaagttaaataggaggtacattaacattctcatattgaagccat |
100 |
Q |
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| T |
39606662 |
ttccatttctgtgaaggcttctaaaataataattaaggggtatttggttcaagtctgaagttaaataggaggtacattaacattctcatattgaagccat |
39606761 |
T |
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| Q |
101 |
gagccatctatcaggatcctaatctcaaaatctcataagtaaaagggtatataaatgtgctctttaagaaagaaaagcttcagaacaccaacacagaaac |
200 |
Q |
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| T |
39606762 |
gagccatctatcaggatcctaatctcaaaatctcataagtaaaagggtatataaatgtgctctttaagaaagaaaagcttcagaacaccaacacaaaaac |
39606861 |
T |
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| Q |
201 |
-aagataaaatagcat |
215 |
Q |
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| T |
39606862 |
aaagataaaatagcat |
39606877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 39617418 - 39617374
Alignment:
| Q |
171 |
agaaaagcttcagaacaccaacacagaaacaagataaaatagcat |
215 |
Q |
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| T |
39617418 |
agaaaagcttcagaacaccaacaaaaaataaagataaaatagcat |
39617374 |
T |
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