View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20319_low_1 (Length: 293)
Name: NF20319_low_1
Description: NF20319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20319_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 10866870 - 10866614
Alignment:
| Q |
22 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
121 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || | |
|
|
| T |
10866870 |
gcggaagccccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10866771 |
T |
|
| Q |
122 |
cgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttc |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10866770 |
cgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaattgtagtcaaaaccttc |
10866671 |
T |
|
| Q |
222 |
catcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
278 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10866670 |
catcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaat |
10866614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 10873435 - 10873691
Alignment:
| Q |
22 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || | |
|
|
| T |
10873435 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10873534 |
T |
|
| Q |
122 |
cgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttc |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10873535 |
cgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttc |
10873634 |
T |
|
| Q |
222 |
catcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
278 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10873635 |
catcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaat |
10873691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 10878506 - 10878762
Alignment:
| Q |
22 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || | |
|
|
| T |
10878506 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10878605 |
T |
|
| Q |
122 |
cgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttc |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10878606 |
cgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttc |
10878705 |
T |
|
| Q |
222 |
catcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
278 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10878706 |
catcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaat |
10878762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 10883577 - 10883833
Alignment:
| Q |
22 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || | |
|
|
| T |
10883577 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10883676 |
T |
|
| Q |
122 |
cgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttc |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10883677 |
cgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttc |
10883776 |
T |
|
| Q |
222 |
catcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaat |
278 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10883777 |
catcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaat |
10883833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 10887495 - 10887758
Alignment:
| Q |
22 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
121 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || || | |
|
|
| T |
10887495 |
gcggaagcacctccggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtattcattcc |
10887594 |
T |
|
| Q |
122 |
cgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttc |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10887595 |
cgtcgagcaacaaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttt |
10887694 |
T |
|
| Q |
222 |
catcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatctctgct |
285 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
10887695 |
catcggtaaaccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgct |
10887758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 39676438 - 39676177
Alignment:
| Q |
18 |
aactgcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactct |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||| |
|
|
| T |
39676438 |
aactgccgaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattct |
39676339 |
T |
|
| Q |
118 |
ttgccgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaac |
217 |
Q |
| |
|
|| || || |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
39676338 |
ttaccatcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaac |
39676239 |
T |
|
| Q |
218 |
cttccatcggtagaccttcaagtgaccttccggtaactctctccactgcttggttcctaatc |
279 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
39676238 |
cttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatc |
39676177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 10046490 - 10046240
Alignment:
| Q |
22 |
gcggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgc |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
10046490 |
gcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtcgttgccatcggcaccgtgtactctttcc |
10046391 |
T |
|
| Q |
122 |
cgtcaagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttc |
221 |
Q |
| |
|
| |||||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
10046390 |
catcaagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttc |
10046291 |
T |
|
| Q |
222 |
catcggtagaccttcaagtgaccttccggtaactctctccactgcttggtt |
272 |
Q |
| |
|
||| |||| ||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
10046290 |
cattggtaaacccgagagtgactttccggtaactctctccaccgcttggtt |
10046240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 37948325 - 37948263
Alignment:
| Q |
27 |
agcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttc |
89 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||| |
|
|
| T |
37948325 |
agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttc |
37948263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 30709477 - 30709688
Alignment:
| Q |
25 |
gaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgt |
124 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||| || ||||||||||| | ||| ||||| ||||| ||||| ||||| |||||||| || | |
|
|
| T |
30709477 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactcaactccat |
30709576 |
T |
|
| Q |
125 |
caagcaacaaaggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccat |
224 |
Q |
| |
|
| | ||||| ||||| |||||||| || || || || |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
30709577 |
ctaacaacagtggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaa |
30709676 |
T |
|
| Q |
225 |
cggtagaccttc |
236 |
Q |
| |
|
||||| |||||| |
|
|
| T |
30709677 |
cggtaaaccttc |
30709688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University