View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20320_high_1 (Length: 465)

Name: NF20320_high_1
Description: NF20320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20320_high_1
NF20320_high_1
[»] chr2 (1 HSPs)
chr2 (3-449)||(7963527-7963974)
[»] chr4 (2 HSPs)
chr4 (259-354)||(8324779-8324875)
chr4 (259-307)||(52062992-52063041)
[»] chr8 (2 HSPs)
chr8 (107-149)||(5368280-5368322)
chr8 (257-307)||(38152187-38152237)
[»] chr3 (4 HSPs)
chr3 (257-306)||(23290365-23290415)
chr3 (256-308)||(42644299-42644352)
chr3 (252-308)||(52931579-52931636)
chr3 (257-308)||(48089630-48089682)
[»] chr1 (3 HSPs)
chr1 (107-149)||(10799261-10799303)
chr1 (117-149)||(536356-536388)
chr1 (96-140)||(15682171-15682215)


Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 3 - 449
Target Start/End: Original strand, 7963527 - 7963974
Alignment:
Q  3 gttacaaattctagttcaagttagaacggattctagaagcaaaacggagggtttggtagatcaattggtttgaactaggagttggagaac-ggtgttcaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7963527 gttacaaattctagttcaagttagaacggattctagaagcaaaacggagggtttggtagatcaattggtttgaactaggagttggagaaccggtgttcaa 7963626  T
Q  102 acactgatgaaggagaaaatattaatcgaacaactaattattaacattgacttttgtgacggttgaatgtttagcttcactttggactactgagagtgat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7963627 acactgatgaaggagaaaatattaatcgaacaactaattattaacattgacttttgtgacggttgaatgtttagcttcactttggactactgagagtgat 7963726  T
Q  202 gattgatgataattgtgtttgaatttgattctattgtggtgaaagttgaatttgaaaaattgattttagttaaaatgagtttaaagtaaaatgatttatg 301  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7963727 gatcgatgataattgtgtttgaatttgattctattgtggtgaaagttgaatttgaaaaattgattttagttaaaatgagtttaaagtaaaatgatttatg 7963826  T
Q  302 gttggatgcgtttgtaggaaagtgagttgactaattgatttgagtgtaaaaatcgtgtttgacttctattctagcttttgattggactctctcaaaagtg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7963827 gttggatgcgtttgtaggaaagtgagttgactaattgatttgagtgtaaaaatcgtgtttgacttctattctagcttttgattggactctctcaaaagtc 7963926  T
Q  402 aatttgagcatgcattgtttgcttatttaggtcttatacttgactttt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7963927 aatttgagcatgcattgtttgcttatttaggtcttatacttgactttt 7963974  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 8324875 - 8324779
Alignment:
Q  259 aattgattttagttaaa-atgagtttaaagtaaaatgatttatggttggatgcgtttgtaggaaagtgagttgactaattgatttgagtgtaaaaat 354  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||| || ||| ||||| |  ||||||  ||||| ||||  ||||||||||||||||    
T  8324875 aattgattttagttaaacatgagtttaaagtagaatgattgatgtttagattcgtttatgcgaaagtatgttgaataataaatttgagtgtaaaaat 8324779  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 52062992 - 52063041
Alignment:
Q  259 aattgattttagttaaaa-tgagtttaaagtaaaatgatttatggttgga 307  Q
    |||||||||||||||||| ||||||||| |||||||||||| || |||||    
T  52062992 aattgattttagttaaaagtgagtttaaggtaaaatgatttctgtttgga 52063041  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 5368280 - 5368322
Alignment:
Q  107 gatgaaggagaaaatattaatcgaacaactaattattaacatt 149  Q
    |||||||||| ||||||||||||||||| |||||| |||||||    
T  5368280 gatgaaggagtaaatattaatcgaacaagtaattactaacatt 5368322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 38152187 - 38152237
Alignment:
Q  257 aaaattgattttagttaaaatgagtttaaagtaaaatgatttatggttgga 307  Q
    ||||||||||||||||||| ||||||| | ||||| ||||||||| |||||    
T  38152187 aaaattgattttagttaaagtgagtttgatgtaaattgatttatgtttgga 38152237  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 23290415 - 23290365
Alignment:
Q  257 aaaattgattttagttaaaa-tgagtttaaagtaaaatgatttatggttgg 306  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  23290415 aaaattgattttagttaaaattgagtgtaaggtaaaatgatttatgtttgg 23290365  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 42644352 - 42644299
Alignment:
Q  256 aaaaattgattttagttaaaa-tgagtttaaagtaaaatgatttatggttggat 308  Q
    ||||||||||||||||||||| |||||| || ||||| ||||||||| ||||||    
T  42644352 aaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttggat 42644299  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 52931579 - 52931636
Alignment:
Q  252 tttgaaaaattgattttagttaaaa-tgagtttaaagtaaaatgatttatggttggat 308  Q
    |||| |||||||||||||||||||| ||||||||  ||||| ||||||||| ||||||    
T  52931579 tttgcaaaattgattttagttaaaagtgagtttagtgtaaattgatttatgtttggat 52931636  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 48089630 - 48089682
Alignment:
Q  257 aaaattgattttagttaaaa-tgagtttaaagtaaaatgatttatggttggat 308  Q
    |||||||||| ||||||||| |||||| || ||||||||||||||| ||||||    
T  48089630 aaaattgattctagttaaaagtgagttgaatgtaaaatgatttatgattggat 48089682  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 10799261 - 10799303
Alignment:
Q  107 gatgaaggagaaaatattaatcgaacaactaattattaacatt 149  Q
    |||||||||| ||||||||||| |||||||||||| |||||||    
T  10799261 gatgaaggagtaaatattaatctaacaactaattactaacatt 10799303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 536356 - 536388
Alignment:
Q  117 aaaatattaatcgaacaactaattattaacatt 149  Q
    |||| ||||||||||||||||||||||||||||    
T  536356 aaaaaattaatcgaacaactaattattaacatt 536388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 15682215 - 15682171
Alignment:
Q  96 gttcaaacactgatgaaggagaaaatattaatcgaacaactaatt 140  Q
    |||||||| | |||||||||| ||||||||||| |||||||||||    
T  15682215 gttcaaacccggatgaaggagtaaatattaatctaacaactaatt 15682171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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