View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20320_high_2 (Length: 313)
Name: NF20320_high_2
Description: NF20320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20320_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 3253740 - 3254028
Alignment:
| Q |
18 |
aaaacgatgtggctagaacctattttttctgttcccataggcaaagcgaacatgctacttgctgcgattcattgggtcaagactc--gagagcttggatt |
115 |
Q |
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| T |
3253740 |
aaaacgatgtggctagaaccttttttttctgttcccataggcaaagcgaacatgctacttgctgcgattcattgggtcaagactcaagagagcttggatt |
3253839 |
T |
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| Q |
116 |
tgataatgtgattttctctacaaactccaagattgtagttcatgcatgattatactaagtatggtcttgttattagggagtgtcgtcacatagttgagtc |
215 |
Q |
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| T |
3253840 |
tgataatgtgattttctctacaaactccaagattgtagttcatgcatgattatacta-gtatggtcttgttattaggaagtgtcgtcacatatttgagtc |
3253938 |
T |
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| Q |
216 |
tagtgtttataactcatgctgagttctctaagagagaagctaatgtggttgctcatcatcttgctaaagctacatgtatttattcttctc |
305 |
Q |
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| T |
3253939 |
tagtgtttataactcatgctgaattctctaagagagaagctaatgtggttgctcatcatcttgctaaagctacatgtatttattcttctc |
3254028 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 27757131 - 27757199
Alignment:
| Q |
214 |
tctagtgtttataactcatgctgagttctctaagagagaagctaatgtggttgctcatcatcttgctaa |
282 |
Q |
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| T |
27757131 |
tctagtgtttacaactcatgttgagttctctaagagagacgctaacatggttgttcttcatcttgctaa |
27757199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 27757005 - 27757055
Alignment:
| Q |
103 |
gagagcttggatttgataatgtgattttctctacaaactccaagattgtag |
153 |
Q |
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| T |
27757005 |
gagagcttggatttgataatataattttctctacacactccaaaattgtag |
27757055 |
T |
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