View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20320_low_1 (Length: 480)
Name: NF20320_low_1
Description: NF20320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20320_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Complemental strand, 36285444 - 36284970
Alignment:
| Q |
15 |
gagaaacacacaaactaaaaccagcaaaaaacttcgagatgatacaatgctgcagactagcacagagaacataattatgcctgcaattaagaatgcaaca |
114 |
Q |
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| T |
36285444 |
gagaaacacagaaactaaaaccaacaaaaaacttcgagatgatacaatgctgcagactagcacagagaacataattatgcctgcaattaagaatgcaaca |
36285345 |
T |
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| Q |
115 |
atcatattggatcattacctaatagatactgaatcaatcatttaacttaacaatcgattaacgaaaccatttaatcgactaacacactcaagggtattcc |
214 |
Q |
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| T |
36285344 |
atcatattggatcattacctaatagatactgaatcaatcatttaacttaacaatcgattaacgaaaccatttaatcgactaacacactcaagggtattcc |
36285245 |
T |
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| Q |
215 |
ctaattt-gaaaatcaccctaataaatcaaccttaatgatcaccagaataaattaatcttaacataccaattcattgtcttaagtttacacaattattca |
313 |
Q |
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| T |
36285244 |
ctaatttggaaaatcaccctaataaatcaaccttaatgatcaccagaataaattaatcttaacataccaattcattatcttaagtttacacaattattca |
36285145 |
T |
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| Q |
314 |
tcacatccaagccattcacaattagccttaactctcaagattttttattccacaatttccctag--------gattatatcttagcctacttcttgcacc |
405 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36285144 |
tcacatccaagccattcacaattagtcttaactctcaagattttttattccacaatttccctaggattatatgattatatcttagcctacttcttgcacc |
36285045 |
T |
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| Q |
406 |
tctctaacatctaatcaattaactgtgttgcctaatcgactatcatcatataaaaattatatgaactcatcactt |
480 |
Q |
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| T |
36285044 |
tctctaacatctaatcaattaactgtgttgcctaatcgactatcatcatataaaaattatatgaactcatcactt |
36284970 |
T |
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