View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_high_1 (Length: 773)
Name: NF20321_high_1
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_1 |
 | |
|
| [»] scaffold2079 (2 HSPs) |
| | |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 20 - 760
Target Start/End: Complemental strand, 6347129 - 6346388
Alignment:
| Q |
20 |
tatgggtcactatcacatgagttaacccaaattatgtcaaagctctttttctatgctttttcttcaacaaagacagtccactgcaatacaaaccttaagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
6347129 |
tatgggtcactatcacatgagttaacccaaattatgtcaaagctctttttctatgctttttcttcaacaaagacagtccaatgtaatacaaaccttaagt |
6347030 |
T |
|
| Q |
120 |
cttgtataaataggtttaaagtgtcacattgtaaccaactttaatttctcattttgtaatatactttctcattactatcaatacaagcttttctctattc |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6347029 |
cttgtataaataggtttaagctgtcacattgtaaccaactttaatttctcattttgtaatatactttctcattactatcaatacaagcttttctcttttc |
6346930 |
T |
|
| Q |
220 |
cttccatggatgccatgcttcataacaatactgaagttagtgttgagctcacagtaagaggaacaatggcacaaggaactacagcagtaaatgcgaccgt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| || | |||| ||||| |
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|
| T |
6346929 |
cttccatggatgccatgcttcataacaatactgaaatttgtgttgagctcacagtaagaggaacaatggcacaaggaaccacaacatcatatgcaaccgt |
6346830 |
T |
|
| Q |
320 |
gttcaattcaacttcaacaaggttaataagttcaattctcagctcataattcactactaaaacattaacttgctatgtttctccttttta-ttggtaact |
418 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
6346829 |
gttcaattcaacttcaacaaggtaaattagttcaattctcagctcataattcactactaaaacattaacttgctatgtttctcttttttatttggtaact |
6346730 |
T |
|
| Q |
419 |
cttctactttgaagttattaaatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggc |
518 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6346729 |
cttctacattcaagttattaaatatactattgctaacattttattttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactattaagc |
6346630 |
T |
|
| Q |
519 |
caattttttgagctattgtttgcaataatcgggtttgcaacaacaaatgcaagtatggagaaatcaccacttctgtttgctttagttttcatggttgctc |
618 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| || ||||||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
6346629 |
caattttttgagctattgttcgcaataattgggtttgcaacaacgaatacaagtatcgaaaaatcaccacttctgatggctttggttttcatggttgctc |
6346530 |
T |
|
| Q |
619 |
ttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttc |
718 |
Q |
| |
|
||| || | |||||||||||||| | |||| | | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6346529 |
tttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggttattgttttacttggaagtgttgtttc |
6346430 |
T |
|
| Q |
719 |
agttcttgctttgatgatgatttctcatacaattgcttggat |
760 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
6346429 |
agttctagctttgatgatgatttctcctacaattgcttggat |
6346388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 600 - 760
Target Start/End: Original strand, 6219562 - 6219722
Alignment:
| Q |
600 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttt |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6219562 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatgatggttattgttt |
6219661 |
T |
|
| Q |
700 |
tacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
760 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
6219662 |
tacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggat |
6219722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 6330651 - 6330494
Alignment:
| Q |
20 |
tatgggtcactatcacatgagttaacccaaattatg----tcaaagctctttttctatgctttttcttcaacaaagacagtccact--gcaatacaaacc |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||| |
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|
| T |
6330651 |
tatgggtcactatcaca---gttaacccaaattattattattaaagctctttttctattctttttcttcaacaaagacagaccaatatgcaatacaaacc |
6330555 |
T |
|
| Q |
114 |
ttaagtcttgtataaataggtttaaagtgtcacattgtaaccaactttaatttctcatttt |
174 |
Q |
| |
|
||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6330554 |
ttaagtcatataaaaataggtttaaggtgtcacattgtaaccaactttaatttctcatttt |
6330494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 462 - 719
Target Start/End: Original strand, 6242588 - 6242845
Alignment:
| Q |
462 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgcaacaa |
561 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||| |
|
|
| T |
6242588 |
ttttcttgaattcattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagctattgtttgcaatcgtcgggtttgcagcaa |
6242687 |
T |
|
| Q |
562 |
caaatgcaagtatggagaaatcaccacttctgtttgctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattca |
661 |
Q |
| |
|
||| |||| | | ||||| | ||| || | ||||| |||||| || ||||| || | | | |||||||||| | |||| ||| ||| |||| |
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|
| T |
6242688 |
tgaatacaagcaacggaaaatctctactgatgatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttca |
6242787 |
T |
|
| Q |
662 |
catcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttca |
719 |
Q |
| |
|
|||||| || |||||||||| ||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
6242788 |
catcaatagtttccttccatacatgatggtaattcttttacttggaagtgttatttca |
6242845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 597 - 760
Target Start/End: Complemental strand, 6333434 - 6333271
Alignment:
| Q |
597 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
696 |
Q |
| |
|
|||||||||||||||||| |||||| || | ||| |||||||||| | ||| ||| || ||||||||||||| ||| |||| | || |||| | ||| |
|
|
| T |
6333434 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaagagtttctttccttccaagatgatcattc |
6333335 |
T |
|
| Q |
697 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
760 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
6333334 |
ttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttggat |
6333271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 462 - 556
Target Start/End: Complemental strand, 6326107 - 6326013
Alignment:
| Q |
462 |
ttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgc |
556 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
6326107 |
ttttcttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgc |
6326013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 446 - 556
Target Start/End: Complemental strand, 6333599 - 6333490
Alignment:
| Q |
446 |
tattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaata |
545 |
Q |
| |
|
|||| ||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
6333599 |
tattcctaacatttacttt-cttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatc |
6333501 |
T |
|
| Q |
546 |
atcgggtttgc |
556 |
Q |
| |
|
||||||||||| |
|
|
| T |
6333500 |
atcgggtttgc |
6333490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 597 - 760
Target Start/End: Complemental strand, 6325957 - 6325794
Alignment:
| Q |
597 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
696 |
Q |
| |
|
|||||||||||||||||| |||||| || | ||| |||||||||| | |||| | | || |||||||||||||| ||| |||| | || |||| | ||| |
|
|
| T |
6325957 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatattcacatcaagagattcattccttccaagatgatcattc |
6325858 |
T |
|
| Q |
697 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
760 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| ||| | ||||| | |||||||| ||||| |
|
|
| T |
6325857 |
ttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggat |
6325794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 439 - 501
Target Start/End: Original strand, 6219395 - 6219457
Alignment:
| Q |
439 |
aatatactattgctaacattttcttttcttgaatttattcaaccctttctagcttgaatgaag |
501 |
Q |
| |
|
||||||||||| ||||||||| | || ||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
6219395 |
aatatactattcctaacatttgatatttttgaattgattcaactctttctagcttgactgaag |
6219457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 823 - 909
Alignment:
| Q |
471 |
atttattcaaccctttctagcttgaatgaagttggaaaactatttggccaattttttgagctattgtttgcaataatcgggtttgca |
557 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
823 |
atttattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgca |
909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 658 - 760
Target Start/End: Original strand, 992 - 1094
Alignment:
| Q |
658 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttg |
757 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||| || | || |||||| | ||||| | ||||||||||| |
|
|
| T |
992 |
ttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaattgcttg |
1091 |
T |
|
| Q |
758 |
gat |
760 |
Q |
| |
|
||| |
|
|
| T |
1092 |
gat |
1094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 176 - 223
Alignment:
| Q |
44 |
acccaaattatgtcaaagctctttttctatgctttttcttcaacaaag |
91 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
176 |
acccaaattatatcaaatctctttatctatgttttttcttcaacaaag |
223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 5690866 - 5690899
Alignment:
| Q |
216 |
attccttccatggatgccatgcttcataacaata |
249 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
5690866 |
attccttccatggatgccatgtttcataacaata |
5690899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 2427244 - 2427281
Alignment:
| Q |
124 |
tataaataggtttaaagtgtcacattgtaaccaacttt |
161 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
2427244 |
tataaataggcttaaggtgtcacattgtaaccaacttt |
2427281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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