View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_104 (Length: 207)
Name: NF20321_high_104
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_104 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 573923 - 574114
Alignment:
| Q |
17 |
ggatgagaagtatgctgagttggaaaacaataaaagagggaat---------gagactaactatgataatttctacttttaattgcaaagtttcacagga |
107 |
Q |
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| T |
573923 |
ggatgagaagtatgctgagttggaaaacaataaaagagggaatcctaaggatgagactaactatgataatttctacttttaattgcaaagtttcacagga |
574022 |
T |
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| Q |
108 |
aactatcaagacagttcttatcaggaaacattagtttcccatgg-------acataaaatgcatgaactatttctatctatcataaatttag |
192 |
Q |
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| T |
574023 |
aactatcaagacagttcttatcaggaaacattagtttcccatggacataaaacataaaatgcatgaactatttctatctatcataaatttag |
574114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 554126 - 554318
Alignment:
| Q |
17 |
ggatgagaagtatgctgagttggaaaacaataaaagagggaat---------gagactaactatgataatttctacttttaattgcaaagtttcacagga |
107 |
Q |
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| T |
554126 |
ggatgagaagtatgctgagttgaaaaacaataatagaaggaatcctaaggatgagactaactatgataatttctacttttaattgcaaagtttcacagga |
554225 |
T |
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| Q |
108 |
aactatcaagacagttcttatcaggaaacattagtttcccatgg-------acataaaatgcatgaactatttcta-tctatcataaatttag |
192 |
Q |
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| T |
554226 |
aactatcaagacagttcttatcaggaaacattagtttcccatggacataaaacataaaatgcatgaactatttctaccctatcataaatttag |
554318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 487140 - 487299
Alignment:
| Q |
17 |
ggatgagaagtatgctgagttggaaaacaataaaagagggaat---------gagactaactatgataatttctacttttaattgcaaagtttcacagga |
107 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||| ||| |||| |||||||||| |||| |
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| T |
487140 |
ggatgggaagtatgctgagttggaaaactataaaagagggaatccaaaggatgagactaacaacgataatttctaattt-aattccaaagtttcagagga |
487238 |
T |
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| Q |
108 |
aactatcaagacagttcttatcaggaaacattagtttcccatggacataaaatgcatgaac |
168 |
Q |
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| T |
487239 |
aactatcaagacagagtttatcagtaaacattagtttcccatggacataaaatgcatgaac |
487299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 487687 - 487740
Alignment:
| Q |
112 |
atcaagacagttcttatcaggaaacattagtttcccatggacataaaatgcatg |
165 |
Q |
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| T |
487687 |
atcaagacagtttttacaagtgaacattagtttcctatggacataaaatgcatg |
487740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 574401 - 574454
Alignment:
| Q |
112 |
atcaagacagttcttatcaggaaacattagtttcccatggacataaaatgcatg |
165 |
Q |
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| T |
574401 |
atcaagacagtttttacaagtgaacattagtttcctatggacataaaatgcatg |
574454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 14961872 - 14961823
Alignment:
| Q |
115 |
aagacagttcttatcaggaaacattagtttcccatggacataaaatgcat |
164 |
Q |
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| T |
14961872 |
aagacagttgttatcagtggacattagtttcccaaggacataaaatgcat |
14961823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 33857359 - 33857326
Alignment:
| Q |
135 |
acattagtttcccatggacataaaatgcatgaac |
168 |
Q |
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| T |
33857359 |
acattagtttcccaaggacataaaatgcatgaac |
33857326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 33923564 - 33923597
Alignment:
| Q |
135 |
acattagtttcccatggacataaaatgcatgaac |
168 |
Q |
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| T |
33923564 |
acattagtttcccaaggacataaaatgcatgaac |
33923597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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