View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_13 (Length: 535)
Name: NF20321_high_13
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 48501386 - 48500860
Alignment:
| Q |
1 |
ttttggttatgcgcttgcgacgcgcctagcgaagcaggttcactctatttccactcgttactcgctccggttctagaaactgcgttgtcaaagaaactag |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48501386 |
ttttggctatgtgcttgcgacgcgcctagcgaagcaggttcactctatttccactcgttactcgctccggttctagaaactgcgttgtcaaagaaactag |
48501287 |
T |
|
| Q |
101 |
cttcggtgctaagaaccttctttattaccgtaggtgtagacactgaactctgtttcatgcgcacccttgggtacataatagcaaaatggtgcattataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48501286 |
cttcggtgctaagaaccttctttattaccgtaggtgtagacactgaactctgtttcatgcgcacccttgggtacataatagcaaaatggtgcattataag |
48501187 |
T |
|
| Q |
201 |
agaattgggtgtaggattacaaacactcgtgccatcgaatccgaaattctcttacgcgacggagtctcatggtttttggattctgaaaggctacgcgccg |
300 |
Q |
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| T |
48501186 |
agaattgggtgtaggattacaaacactcgtgccatcgaatccgaaattctcttacgcgacggagtctcatggtttttggattctgaaaggctacgcgccg |
48501087 |
T |
|
| Q |
301 |
gttatgacgatgaaactggcgagaaactatgggcaaaatggtaaatttcaaggtattgatgctaaggagtcaataatcaggtacggtctagctcaccacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48501086 |
gttatgacgatgaaactggcgagaaactatgggcaaaatggtaaatttcaaggtattgatgctaaggagtcaataatcaggtacggtctagctcaccacc |
48500987 |
T |
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| Q |
401 |
aattggaagcacacgtgcagttggaatatacagttggattttatgatggattcattcgggttaatacacgtgttgataatatgcgtctccatgtggcgag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500986 |
aattggaagcacacgtgcagttggaatatacagttggattttatgatggattcattcgggttaatacacgtgttgataatatgcgtctccatgtggcgag |
48500887 |
T |
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| Q |
501 |
gttaggttttaaacacggtgatgatgt |
527 |
Q |
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| T |
48500886 |
gttaggttttaaacacggtgatgatgt |
48500860 |
T |
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