View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_14 (Length: 488)
Name: NF20321_high_14
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 37806295 - 37806782
Alignment:
| Q |
1 |
gctgctagccaatagttttttcttgtgatcaaaatgctggccaataaaattaaaagnnnnnnnnnnn-----gttgttaattctgttatga-tttagaat |
94 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |
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| T |
37806295 |
gctgctagccaatagttttttcttgtgatcaaaatgctggccaataaaattaaaaggtttttttttttttttgttgttaattctgttataaatttagaaa |
37806394 |
T |
|
| Q |
95 |
aa--ggtttctgataatttgatgagtttgagagaattattttgggtacgttcatgcaatgcaacacaggcttttgtttgaacgcttgttatttgtttgtg |
192 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37806395 |
aaaaggtttctgataatttgatgagtttgagagaattattttgggtacgtacatgcaatgcaacacaggctttagtttgaacgcttgttatttgtttgtg |
37806494 |
T |
|
| Q |
193 |
gcggagacgtatcaacttgtggtcctaaactcctaatgtattcctgttgtaccaggtcatttaaaagtgtttatcgttttttatttggaaaataatgtac |
292 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37806495 |
gcggagacgtatcaacttgtggtcctaaactccaaatgtactcctgttgtaccagctcatttaaaagtgtttatcgttttttatttggaaaataatgttc |
37806594 |
T |
|
| Q |
293 |
attcatacgtcccatgttcaaattgagagaaaagaaacataatcacaatctgattgataagtgttttgataagaggaaaaacataaagaaaaaattaagt |
392 |
Q |
| |
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|||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806595 |
attcatacaccccatgtttaatttgagagagaagaaacataatcacaatctgattgataagtgttttgataagaggaaaaacataaagaaaaaattaagt |
37806694 |
T |
|
| Q |
393 |
ggtgaatgagtgttaattataagtgttgaaaatatttaatatctaacaattttctactactccctccgttccatattagatgatatag |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806695 |
ggtgaatgagtgttaattataagtgttgaaaatatttaatgtctaacaattttctactactccctccgttccatattagatgatatag |
37806782 |
T |
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