View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_15 (Length: 483)
Name: NF20321_high_15
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Original strand, 34185450 - 34185914
Alignment:
| Q |
10 |
gtgagatgaagaagggaggtgaggtgacaaatcgtggatatttcaaatgagttttcacaattttattgtatgcaaaaagatatctatcaccattctccaa |
109 |
Q |
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| T |
34185450 |
gtgacatgaagaagggaggtgaggtgacaaatcgtggatatttcaaatgagttttcacaattttattgtatgcaaaaagatatctatcaccattctccaa |
34185549 |
T |
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| Q |
110 |
tgaaaatgatctattttgggtctatatgtttgacaagagaggggttaatataacatatctagataaatcttgtaagaaaacaaacataaac---tgacaa |
206 |
Q |
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| T |
34185550 |
tgaaaatgatctattttgggtctatatgtttgacaagagaggggttaatataacatatctagataaatcttgtaagaaaacaaacataaacttatgacaa |
34185649 |
T |
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| Q |
207 |
atacttgcaaaattttctgcccaatttatgggattgtgtcgatgatattgtttatgttcctgtgaattttaattgttgtttccacgaagtagcagttttc |
306 |
Q |
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| T |
34185650 |
atacttgcaaaattttctgcccaatttatgggattgtgtcgatgatattgtttatgttcctgtgaattttaattgttgtttccacgaagtagcagttttc |
34185749 |
T |
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| Q |
307 |
tttttattgatagataaaatgacaagagtcattgaaaacttaaacgcataagtgaagcagtcggagttcaaacccaagtca-cgagatggttgttgtact |
405 |
Q |
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| T |
34185750 |
tttttgttgatagataaaatgacaagagtcattgaaaacttaaacgcataagtgaagcagtcggagttcaaaccccagtcattgagatggttgttgtact |
34185849 |
T |
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| Q |
406 |
cttttaataa-nnnnnnnnggaaaggagttgttatatagtcttataaactatacaatatactata |
469 |
Q |
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| T |
34185850 |
cttttaataatttttttttggaaaggagttgttatatagtcttataaactatacaatatactata |
34185914 |
T |
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