View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_29 (Length: 420)
Name: NF20321_high_29
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 5461324 - 5461723
Alignment:
| Q |
1 |
gtcgataattttgtcaaacttactgcgatttcaaacatatattttggatcgaaagtaagtttgacaaaatcacgattataaaaactacactttaaaattt |
100 |
Q |
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| T |
5461324 |
gtcgataattttgtcaaacttactgcgatttcaaacatatattttggattgaaagtaagtttgacaaaatcacgatgataaaaactacactttaaaattt |
5461423 |
T |
|
| Q |
101 |
taacaaaattacagcgttaccgtaaaaaagttatgaaggtcgacttgttttttcatattcgagatcattgacctaataatttactaagaatggtgtctgc |
200 |
Q |
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| T |
5461424 |
taacaaaattacagcgttaccgtaaaaaagttatgaaggtagacttgttttttcatattcgagatcattgacctaataatttactaagaatggtgtctgc |
5461523 |
T |
|
| Q |
201 |
aaacataccatgagatttccaacaccagccattggaaaatgcaaaggtttgctgatcaagtaatttccaccttgaagattaatttgagcacctccaaggt |
300 |
Q |
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| T |
5461524 |
aaatataccatgagatttccaacaccagccattggaaaatgcaaaggtttgctgatcaagtaatttccaccttgaagattaatttgagcacctccaaggt |
5461623 |
T |
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| Q |
301 |
caattatgccattcatcaaaaaccctttacttggaccttttgcagcatcagctatggcagcaagaagtgcatcagtgctatctgaatttcctgttggatc |
400 |
Q |
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| T |
5461624 |
caattatgccattcatcaaaaaccctttacttggaccttttgcagcatcagctatggcagcaagaagtgcatcagtgctatctgaatttcctgttggatc |
5461723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 402
Target Start/End: Complemental strand, 15159571 - 15159421
Alignment:
| Q |
252 |
ctgatcaagtaatttccaccttgaagattaatttgagcacctccaaggtcaattatgccattcatcaaaaaccctttacttggaccttttgcagcatcag |
351 |
Q |
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| T |
15159571 |
ctgatcatataatttccaccttcaagattaatctgtgcacctccaaggttactgatgccttccatcaaatatccttcacttggaccattggttgcatctg |
15159472 |
T |
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| Q |
352 |
ctatggcagcaagaagtgcatcagtgctatctgaatttcctgttggatctg |
402 |
Q |
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||||||| ||||| | ||| ||||||||||||||||| |||||||| |||| |
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| T |
15159471 |
ctatggctgcaagtaatgcttcagtgctatctgaattgcctgttgggtctg |
15159421 |
T |
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