View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_3 (Length: 747)
Name: NF20321_high_3
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_3 |
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| [»] scaffold1113 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 494; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 217 - 726
Target Start/End: Original strand, 32684284 - 32684793
Alignment:
| Q |
217 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684284 |
cctctaaaccagcagatctggcagctgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
32684383 |
T |
|
| Q |
317 |
gacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgtattcaatgaaagaactaagcatttagaaattgacatatagcttg |
416 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684384 |
gacctcattgcgttatattttgatagtcaaagtgtcatttacataacatctatattattcaatgaaagaactaagcatttagaaattgacatatagcttg |
32684483 |
T |
|
| Q |
417 |
ctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684484 |
ctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaa |
32684583 |
T |
|
| Q |
517 |
aactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684584 |
aactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcat |
32684683 |
T |
|
| Q |
617 |
tctctattctgattttcttcatactttccattcagccttaaacatgatttttgcttgagacatcacaaacctcgaatcataagaatctgagactactaaa |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684684 |
tctctattctgattttcttcatactttccattcagccttaaacatgatttttgcttgagacatcacaaacctcgaatcataagaatctgagactactaaa |
32684783 |
T |
|
| Q |
717 |
gtgttggcgg |
726 |
Q |
| |
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|||||||||| |
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| T |
32684784 |
gtgttggcgg |
32684793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 274 - 661
Target Start/End: Complemental strand, 32560082 - 32559715
Alignment:
| Q |
274 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgta |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
32560082 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcgttgcgttatattgtgatagtgaaagtgtcatttacataacatgcattgta |
32559983 |
T |
|
| Q |
374 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559982 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaataagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
32559883 |
T |
|
| Q |
474 |
gttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagt |
573 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559882 |
gttagagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagt |
32559783 |
T |
|
| Q |
574 |
gtatcattttctagttaacatgatcattttctttcttgttcattctctattctgattttcttcatactttccattcagccttaaacat |
661 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32559782 |
gtatcatt--------------------ttctttcttgttcattctctattctgattttcttcatacttttcattcagccttaaacat |
32559715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 32684079 - 32684226
Alignment:
| Q |
12 |
cagagataggggaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684079 |
cagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct |
32684178 |
T |
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| Q |
112 |
gatttagcattcaaggcaagtttttctctaacaataattttgattcta |
159 |
Q |
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| T |
32684179 |
gatttagcattcaaggcaagtttttctctaacaataattttgattcta |
32684226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 32692182 - 32692276
Alignment:
| Q |
217 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaag |
311 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32692182 |
cctctaaaccagcagatctggcagctgaattgtgtgctgaaatgcaaggttgaatataaagaggaggttgacaatgaccgtaaagaactttgaag |
32692276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 659 - 726
Target Start/End: Complemental strand, 32559694 - 32559627
Alignment:
| Q |
659 |
catgatttttgcttgagacatcacaaacctcgaatcataagaatctgagactactaaagtgttggcgg |
726 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
32559694 |
catgatttttgcttgagacatcacaaacctcgaatcataagaatccgagactactaaagtgttagcgg |
32559627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 32692090 - 32692124
Alignment:
| Q |
125 |
aggcaagtttttctctaacaataattttgattcta |
159 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattcta |
32692124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 134 - 61
Alignment:
| Q |
86 |
gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattcta |
159 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattcta |
61 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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