View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_32 (Length: 410)
Name: NF20321_high_32
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 52578624 - 52578237
Alignment:
| Q |
18 |
taaccaatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacactt |
117 |
Q |
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| T |
52578624 |
taaccaatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacactt |
52578525 |
T |
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| Q |
118 |
ctgtgttaaattccacttcannnnnnnnnn----aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgtg |
213 |
Q |
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| T |
52578524 |
ctgtgttaaattctacttcattttttttttttttaatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gtg |
52578426 |
T |
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| Q |
214 |
aaataaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578425 |
aaataaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttc |
52578326 |
T |
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| Q |
314 |
taaagaatcaagagttaatataatatggatagcattctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtctgtgct |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
52578325 |
taaagaatcaagagttaatataatatggatagcattctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgct |
52578237 |
T |
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