View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_35 (Length: 387)
Name: NF20321_high_35
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_35 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 13879297 - 13878921
Alignment:
| Q |
11 |
cagagaagtagttttttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttct |
110 |
Q |
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| T |
13879297 |
cagagaagtagtattttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttct |
13879198 |
T |
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| Q |
111 |
gtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatag |
210 |
Q |
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| T |
13879197 |
gtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatag |
13879098 |
T |
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| Q |
211 |
ctagttgatgcaacttaatctgccttctattttgttgcgatccacctttcaaattttgttatattgattgaagcgtacacacataactgcttgatgcatt |
310 |
Q |
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| T |
13879097 |
ctagttgatgcaacttaatctgccttctattttgttgcgatcgacctttcaaattttgttatattgattgaagcgtacacacataactgcttgctgcatt |
13878998 |
T |
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| Q |
311 |
aaacttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtac |
387 |
Q |
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| T |
13878997 |
aaatttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtac |
13878921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 13874799 - 13874737
Alignment:
| Q |
272 |
tattgattgaagcgtacacacataactgcttgatgcattaaacttagagctgttagaaaagat |
334 |
Q |
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| T |
13874799 |
tattgattgaagcgtacacacataattgcttgctgcattatacttagagctgttagaaaagat |
13874737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
142 |
taccaattgctatcaatcaatattataaatatatgatta |
180 |
Q |
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| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
19 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
100 |
Q |
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| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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