View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_36 (Length: 383)
Name: NF20321_high_36
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 369
Target Start/End: Original strand, 32748276 - 32748642
Alignment:
| Q |
6 |
agaagcaaaggtagtttaattgaccaccaaattattggtgcctagtgtgtgtttgttgtaaaccctaggttcctgagtttg-attcacacatgtnnnnnn |
104 |
Q |
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| T |
32748276 |
agaaacaaaagtagtttaattgaccaccaaattgttggtgcctagtgtgtgtttgttgtaaaccttaggttcctgagtttggattcacacacgtaaaaaa |
32748375 |
T |
|
| Q |
105 |
nnn--tctaatcaataacaataaagttaccttcaatttcaacccaaccatccaaatagttagctgataagtcaagatgaactaaatggttgaaaggaaga |
202 |
Q |
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| T |
32748376 |
aaaaatctaatcgataacaataaagttaccttcaatttcaacccaaccatccaaatagttagcttttaagtcaagatgaactaactggttgaaaggaaga |
32748475 |
T |
|
| Q |
203 |
aagtatgaaaaattgaggagccagacatcagttgtatcggttggaattgtaactccaccaagcaagagatccatgacatgtcctctggagtggttgcact |
302 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
32748476 |
aagtatgaaaaattgaggagccagtcatcagttgtatcggttggaattgtaactccaccaagcaagagatctatgacatgtcctgtggaatggttgcact |
32748575 |
T |
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| Q |
303 |
tgacacactcccataaacaacaatcaacatcactcttatcatcccatgatgtaagattattgtatgt |
369 |
Q |
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| T |
32748576 |
tgacacgctcccataaacaacaatcaacatcactcttatcatcccatgatgtaagattattgtatgt |
32748642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 122 - 367
Target Start/End: Original strand, 4914441 - 4914683
Alignment:
| Q |
122 |
ataaagttaccttcaatttcaacccaaccatccaaatagttagctgataagtcaagatgaactaaatggttgaaaggaagaaagtatgaaaaattgagga |
221 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |
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| T |
4914441 |
ataaagttaccttcaatttcaacccaaccatcaaaatagttagctgataagtcaagatgaactaaatggttgaaaggaagaaaatatgaaaagttgaaga |
4914540 |
T |
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| Q |
222 |
gccagacatcagttgtatcggttggaattgtaactccaccaagcaagagatccatgacatgtcctctggagtggttgcacttgacacactcccataaaca |
321 |
Q |
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||| | || |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||| | || |
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| T |
4914541 |
tccaaagataagttgtattggttggaattgtaactcctccaagcaagagatccataacatgtcctgtggtatggttgcacttgacacgctcccatgagca |
4914640 |
T |
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| Q |
322 |
acaatcaacatcactcttatcatcccatgatgtaagattattgtat |
367 |
Q |
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| T |
4914641 |
acaatcaacatcactctt---atcccatgatgtaagattattgtat |
4914683 |
T |
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