View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_37 (Length: 379)
Name: NF20321_high_37
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 13874427 - 13874629
Alignment:
| Q |
86 |
gatcagttgatagtcccgtaaaacagttaaaagttaaatgatcgatgctatcaatgttatgattagacaagctaacaagcaatttatgg-caatagaatg |
184 |
Q |
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| T |
13874427 |
gatcacttgatagtcccgtaaaaccattgaaaattaaatgat----gttatcaatgctatgatttgacaagccagcaaaatatttatgggcaatagaatg |
13874522 |
T |
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| Q |
185 |
aatgagaattactaagaacttcacaagtgtagtgatcacttggtcctgtaaacacaattaacaacg-aaatgaggccattaatcacttgtagtggtaagg |
283 |
Q |
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| T |
13874523 |
aatgagaattaccaagaacttcacaagtgtggcgatcacttagtcccataaacacaattaacaacgaaaatgaggccattgatcacttgacgttgtaagg |
13874622 |
T |
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| Q |
284 |
aaaaata |
290 |
Q |
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| T |
13874623 |
acaaata |
13874629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 13878786 - 13878865
Alignment:
| Q |
293 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaaaagaaaagttatctatctattacctttg |
372 |
Q |
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| T |
13878786 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaagtgaaaagttatctatctattacctttg |
13878865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 13884475 - 13884566
Alignment:
| Q |
184 |
gaatgagaattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaatcacttgtagtg |
277 |
Q |
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| T |
13884475 |
gaatgacaattaccaagaacttcaacaagtgtagtgatcactt---cccataaacacaattaacaaggaaatgaagccattaattacttgcagtg |
13884566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 13872183 - 13872260
Alignment:
| Q |
184 |
gaatgagaattactaagaacttca-caagtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccatt |
263 |
Q |
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| T |
13872183 |
gaatgacaattaccaagaacttcaacaagtgtagtgatcactt---cctataaacacaattaacaaggaaatggggccatt |
13872260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 12957723 - 12957643
Alignment:
| Q |
184 |
gaatgagaattactaagaacttcacaa-gtgtagtgatcacttggtcctgtaaacacaattaacaacgaaatgaggccattaat |
266 |
Q |
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| T |
12957723 |
gaatgacaattaccaagaacttcaaaaagtgtagtaatcactt---cccataaacacaattaacaaggaaatgaggccattaat |
12957643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 13871993 - 13872045
Alignment:
| Q |
14 |
cagaatcaccaacccaaaccatgagaaagaaacaaaaattcagcaatacatta |
66 |
Q |
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| T |
13871993 |
cagaatcaccactctaaaccatgataaagaaacaaacattcagcagtacatta |
13872045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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