View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_45 (Length: 342)
Name: NF20321_high_45
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_45 |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 23852263 - 23852605
Alignment:
| Q |
1 |
atggtgttttaggtttagggcaatcttactttaaccctactctttttcgaccttacgattataggtcaattgggattagaaccgagtcaatgattcaaaa |
100 |
Q |
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| T |
23852263 |
atggtgttttaggtttagggcaatcttactttaactctactctttttcgaccttatgattataggtcaatcgggattagaaccgagtcaatgattcaaaa |
23852362 |
T |
|
| Q |
101 |
accacattattttagccctaagattgccccacacagttttgggtacagc-atagtgctttgttgcaagatatcttaaatccttctctcgtgtcattgaga |
199 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852363 |
accacattattttagccctaagattaccccacacagttttgggtacagccatagtgctttgttgcaagatatcttaaatccttctctcgtgtcattgaga |
23852462 |
T |
|
| Q |
200 |
aatatggggggtggtaatagagggtttggaaacctaggtattggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgcta |
299 |
Q |
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| T |
23852463 |
aatatggggggtagtaatagagggtttggaaacctaggtattggcggtgcaactacttcaagaatcgaagatggtacaaataataataaaattggtgcta |
23852562 |
T |
|
| Q |
300 |
ttttaaaattgggagattcttctacaaatattgctacaagttc |
342 |
Q |
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| T |
23852563 |
ttttaaaattgggagattcttctacaaatattgctacaagttc |
23852605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 23856838 - 23856928
Alignment:
| Q |
8 |
tttaggtttagggcaatcttactttaaccctactctttttcgaccttacgattataggtcaattgggattagaaccgagtcaatgattcaaa |
99 |
Q |
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| T |
23856838 |
tttaggtttaaagaaatcttactttaatcctactcttttttgaccttaagattataggtcacttggg-ttaaaaccgagtcaatgattcaaa |
23856928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 23856925 - 23856980
Alignment:
| Q |
276 |
caaataataataaaattggtgctattttaaaattgggagattcttctacaaatatt |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23856925 |
caaataataataaaattggtgctattttaaaattgggagtttcttctacaaatatt |
23856980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 3156881 - 3156554
Alignment:
| Q |
13 |
gtttagggcaatcttactttaaccctactctttttcgaccttacgattataggtcaattgggattagaaccgagtcaatgattcaaaaaccacattattt |
112 |
Q |
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|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||| |||| | |
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| T |
3156881 |
gtttggggcaatcttacttttatcctactctttttcgaccttacgattataggtcactcggggtcagaaccgagtcaatgattcaaaaaccaccttatat |
3156782 |
T |
|
| Q |
113 |
tagccctaagattgccccacacagttttgggtacag-catagtgctttgttgcaagatatcttaaatccttctctcgtgtcattgagaaatatggggggt |
211 |
Q |
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||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
3156781 |
tagccctaagattaccccacacagttttgggtaccgtcatagtgctttgttgcaagagatcttaaacccttctcttgtgtcattgagaaatatgaggggt |
3156682 |
T |
|
| Q |
212 |
ggtaatagagggtttggaaacctaggtattggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgg |
311 |
Q |
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||||| || |||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||| | |
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| T |
3156681 |
ggtaacagcgggtttggaaacctagctattggtggtgcaagtacttcaaggattgaagatggtacaaata---ataaaataggtgctattctaaaattag |
3156585 |
T |
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| Q |
312 |
gagattcttctacaaatattgctacaagttc |
342 |
Q |
| |
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||||||||||||||||| ||||| ||||||| |
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| T |
3156584 |
gagattcttctacaaatgttgctgcaagttc |
3156554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 38 - 338
Target Start/End: Complemental strand, 3139124 - 3138826
Alignment:
| Q |
38 |
tactctttttcgaccttacgattataggtcaattgggattagaaccgagtcaatgattcaaaaaccacattattttagccctaagattgccccacacagt |
137 |
Q |
| |
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|||||||||| |||||| |||||||||| ||||| ||||| | |||||||||||||||||||||| |||||||| ||||| ||| | ||||| ||| |
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| T |
3139124 |
tactctttttacaccttatagttataggtcacttggggttagatcagagtcaatgattcaaaaaccaccttattttaaccctagaattactccacatagt |
3139025 |
T |
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| Q |
138 |
tttgggtacag-catagtgctttgttgcaagatatcttaaatccttctctcgtgtcattgagaaatatggggggtggtaatagagggtttggaaacctag |
236 |
Q |
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|||||||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||| ||||||||| | | ||||||| |||| |
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| T |
3139024 |
tttgggtatagtcatagtgctttgttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgggggttggtaatagcgtgattggaaatctag |
3138925 |
T |
|
| Q |
237 |
gtattggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgctac |
336 |
Q |
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||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
3138924 |
gtattggtggtgcaactacttcaaagatcgaatatggtaca---tataataaaattggtgctattttagaattgggagattcttctacaaaggttgctac |
3138828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 3167634 - 3167737
Alignment:
| Q |
236 |
ggtattggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgcta |
335 |
Q |
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|||||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
3167634 |
ggtattggtggtgcaagtacttcaaggatagaagatggtacaaata---ataaaattggtgctattctaaaattaggagattcttctacaaatgttgcta |
3167730 |
T |
|
| Q |
336 |
caagttc |
342 |
Q |
| |
|
||||||| |
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| T |
3167731 |
caagttc |
3167737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 342
Target Start/End: Original strand, 2023212 - 2023304
Alignment:
| Q |
247 |
tgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgctacaagttc |
342 |
Q |
| |
|
||||||||||| |||||| ||||||||| | ||||||||||||||| ||| | |||| || | |||||||||||||||| || | |||||||| |
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|
| T |
2023212 |
tgcaactactttaaggattgaagatggt---gaaaataataaaattggtactaatctaaagtttgaagattcttctacaaatgttacaacaagttc |
2023304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3167377 - 3167414
Alignment:
| Q |
1 |
atggtgttttaggtttagggcaatcttactttaaccct |
38 |
Q |
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|||||||||| |||||||||||| |||||||||||||| |
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| T |
3167377 |
atggtgtttttggtttagggcaaccttactttaaccct |
3167414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 1725234 - 1725340
Alignment:
| Q |
233 |
ctaggtattggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattg |
332 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||| | || ||| |
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| T |
1725234 |
ctaggtattggtggtggaactacttcaaggattgaagatgacacaaata---ataaaattggtgctatttttaaatggggagattcttctaaacatgttg |
1725330 |
T |
|
| Q |
333 |
ctacaagttc |
342 |
Q |
| |
|
|||||||||| |
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| T |
1725331 |
ctacaagttc |
1725340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 342
Target Start/End: Original strand, 1739596 - 1739695
Alignment:
| Q |
240 |
ttggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgctacaag |
339 |
Q |
| |
|
|||| ||||||||| |||| ||||| ||||||||||| ||| | || | ||||||||||| |||||| |||||||||||||||||| |||||||||| |
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|
| T |
1739596 |
ttggtggtgcaactgcttcgaggattgaagatggtacgaatgacaaga---ttggtgctattataaaatctggagattcttctacaaatgttgctacaag |
1739692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 342
Target Start/End: Original strand, 1744933 - 1745032
Alignment:
| Q |
240 |
ttggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgctacaag |
339 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||| ||||| || | ||||||||||| ||||| |||||||||||||||||| |||| ||||| |
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| T |
1744933 |
ttggtggtgcaactgcttcaaggattgaagatggtatgaataacaaga---ttggtgctattactaaatttggagattcttctacaaatgttgccacaag |
1745029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 1739425 - 1739467
Alignment:
| Q |
240 |
ttggcggtgcaactacttcaaggatcgaagatggtacaaataa |
282 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
1739425 |
ttggtggttcaactacttcaaggattgaagatggtacaaataa |
1739467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 1763762 - 1763823
Alignment:
| Q |
281 |
aataataaaattggtgctattttaaaattgggagattcttctacaaatattgctacaagttc |
342 |
Q |
| |
|
|||||||| ||||||| | |||| ||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
1763762 |
aataataatattggtgttttttttaaattgggagattcttcctcaaacgttgctacaagttc |
1763823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 7490927 - 7490840
Alignment:
| Q |
233 |
ctaggtattggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttcta |
323 |
Q |
| |
|
|||||| |||| || |||| ||||||||| || |||||||||||||||||||| ||||||||||||| ||||| | ||||||||||||| |
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| T |
7490927 |
ctaggttttggtggagcaagtacttcaagaattgaagatggtacaaataataa---aattggtgctattctaaaacttggagattcttcta |
7490840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 7484173 - 7484085
Alignment:
| Q |
233 |
ctaggtattggcggtgcaactacttcaaggatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctac |
324 |
Q |
| |
|
|||||| |||| || |||| ||||||||| || ||||||||||||||||||| ||||||||||||| ||||| | || ||||||||||| |
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| T |
7484173 |
ctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataa---aattggtgctattctaaaacttggtgattcttctac |
7484085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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