View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_high_48 (Length: 329)

Name: NF20321_high_48
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_high_48
NF20321_high_48
[»] chr5 (5 HSPs)
chr5 (82-321)||(43240519-43240758)
chr5 (147-315)||(38927812-38927979)
chr5 (83-154)||(38928005-38928075)
chr5 (17-62)||(43239882-43239927)
chr5 (166-235)||(21115189-21115258)
[»] chr7 (2 HSPs)
chr7 (147-315)||(3570869-3571036)
chr7 (83-154)||(3571062-3571132)
[»] chr1 (2 HSPs)
chr1 (161-315)||(46354238-46354391)
chr1 (83-154)||(46354434-46354505)
[»] scaffold0039 (1 HSPs)
scaffold0039 (156-248)||(80963-81059)
[»] chr8 (1 HSPs)
chr8 (166-235)||(43651982-43652051)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 82 - 321
Target Start/End: Original strand, 43240519 - 43240758
Alignment:
Q  82 actttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcactttctgaagtttaattgataatcataaagt 181  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43240519 actttcaatttgttattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcactttctgaagtttaattgataatcataaagt 43240618  T
Q  182 aaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagttttattgccactataaacttggtgggtgc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43240619 aaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttctgagtattattgccactataaacttggtgggtgc 43240718  T
Q  282 aacatctaattatacttgcggaatttcggctattcatctc 321  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43240719 aacatctaattatacttgcggaatttcggctattcatctc 43240758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 147 - 315
Target Start/End: Complemental strand, 38927979 - 38927812
Alignment:
Q  147 tgcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatactt 246  Q
    ||||||||  ||| ||||||| ||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  38927979 tgcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatactt 38927883  T
Q  247 ct--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt 315  Q
    ||  || ||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  38927882 ctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatt 38927812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 38928075 - 38928005
Alignment:
Q  83 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 154  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  38928075 ctttcaatttgctattttttatgtaatgaaaaggactttcatcagttac-caccacaaatgccttgcacttt 38928005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 43239882 - 43239927
Alignment:
Q  17 cttctttcattcttttgttgtagtattatctataatctatatctat 62  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  43239882 cttctttcattcttttgttgtagtattatctataatctataactat 43239927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 21115258 - 21115189
Alignment:
Q  166 ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc 235  Q
    ||||||||||||||| ||| ||||  |  |||||| |||||||  ||||| |||||||||||||||||||    
T  21115258 ttgataatcataaagaaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc 21115189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 147 - 315
Target Start/End: Complemental strand, 3571036 - 3570869
Alignment:
Q  147 tgcactttctgaagtttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatactt 246  Q
    ||||||||  ||| ||||||| ||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  3571036 tgcacttttggaattttaattcataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtactccaaatatactt 3570940  T
Q  247 ct--gagttttattgccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt 315  Q
    ||  || ||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  3570939 ctatgaatttcattgccactataaacttggtgtgtgcaatatctaattatacttgcagaatttcggatatt 3570869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 3571132 - 3571062
Alignment:
Q  83 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 154  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  3571132 ctttcaatttgctattttttatgtaatgaaaaggactttcatcaattac-caccacaaatgccttgcacttt 3571062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 161 - 315
Target Start/End: Complemental strand, 46354391 - 46354238
Alignment:
Q  161 tttaattgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactcaaaatatacttct--gagttttatt 258  Q
    ||||||||||||||||||||| ||||| | ||||| |   ||||||||| ||||| ||||||||||||||||||  ||||||||||||  || |||||||    
T  46354391 tttaattgataatcataaagttaagttctgctacggt---tattgggtaagaaaaatgtaaaactaatagtacttcaaatatacttctatgaattttatt 46354295  T
Q  259 gccactataaacttggtgggtgcaacatctaattatacttgcggaatttcggctatt 315  Q
    ||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||    
T  46354294 gccactataaatttggtgtgtgcaatatctaattatacttgcagaatttcagctatt 46354238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 46354505 - 46354434
Alignment:
Q  83 ctttcaatttgctattttttgcgtaatgaaaaggactttcatcagttactaaccacaaatgccttgcacttt 154  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  46354505 ctttcaatttgctattttttacgtaatgaaaaggacttccatcagttaccaaccacaaatgccttgcacttt 46354434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 80963 - 81059
Alignment:
Q  156 tgaagtttaattgataatcataaagtaaagttttactacgataatta----ttgggtaggaaaattgtaaaactaatagtactcaaaatatacttct 248  Q
    ||||| || |||||||||||||||||||||||||| |  ||||||||    ||||||  ||||||||||||||||||||||||| | ||||||||||    
T  80963 tgaaggtttattgataatcataaagtaaagttttaatgtgataattaatgattgggtgagaaaattgtaaaactaatagtactccatatatacttct 81059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 43652051 - 43651982
Alignment:
Q  166 ttgataatcataaagtaaagttttactacgataattattgggtaggaaaattgtaaaactaatagtactc 235  Q
    ||||||||||||||| ||| ||||  |  |||||| |||||||  ||||| |||||||||||||||||||    
T  43652051 ttgataatcataaaggaaatttttgttgtgataatgattgggtgagaaaaatgtaaaactaatagtactc 43651982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University