View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_52 (Length: 319)
Name: NF20321_high_52
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 6322782 - 6322491
Alignment:
| Q |
17 |
atcttgtcacttttacacgatatgaagcctgcaaataacttcgatgtttagacaccatacaaaatgcaccattgtcaatatgtataatttggaggaatta |
116 |
Q |
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| T |
6322782 |
atcttgtcacttttacacgatatgaagcctgcaaataacttcgatgtttagacaccatacaaaattcaccattgtcaatatgtataatttggaggaatta |
6322683 |
T |
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| Q |
117 |
tctgtcacctgattacaaccaaattcaatcacatgagaaggacggatgcgggcaggataatttggagataccatataccgtctcccttcattgctgaaaa |
216 |
Q |
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| T |
6322682 |
tctgtcacctgattacaaccaaattcaatcacatgagaaggacggatgcgggcaggataatttggagataccatataccgtctcccttcattgctgaaaa |
6322583 |
T |
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| Q |
217 |
tatgacaagaaacaaattagatatacaattttctagacttgtaatattcgatnnnnnnnnnnnttagtagcctgaaatttgatttacttactc |
309 |
Q |
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| T |
6322582 |
tatgatgagaaacaaattagatatacaattttctagacttgtaatattcgat-aaaaaaaaaattagtagcctgaaatttgatttacttactc |
6322491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 29200755 - 29200619
Alignment:
| Q |
83 |
caccattgtcaatatgtataatttgga-ggaattatctgtcacctgattacaaccaaattcaatcacatgagaaggacggatgcgggcaggataatttgg |
181 |
Q |
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| T |
29200755 |
caccattgtcaatatgcataaatttgacggaattatctgtcacctgattagaaccaaactcaatcacatgagaaggaaggatgcagctaggatgatttgg |
29200656 |
T |
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| Q |
182 |
agataccatataccgtctcccttcattgctgaaaata |
218 |
Q |
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| T |
29200655 |
aggtacgatatatcgcctcccttcattgttgaaaata |
29200619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 29201315 - 29201281
Alignment:
| Q |
20 |
ttgtcacttttacacgatatgaagcctgcaaataa |
54 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
29201315 |
ttgtcaattttacacgatatgaagcctgcaaataa |
29201281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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