View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_high_58 (Length: 305)

Name: NF20321_high_58
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_high_58
NF20321_high_58
[»] chr4 (4 HSPs)
chr4 (16-289)||(55174792-55175065)
chr4 (95-222)||(55178544-55178669)
chr4 (144-266)||(50906734-50906856)
chr4 (19-105)||(50906872-50906959)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 55175065 - 55174792
Alignment:
Q  16 ctgtgtcattctttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55175065 ctgtgtcattctttcactctagatgtcagcttttattgaatataaacaagtcaacacttatttaagcaaagtacaaataaaaaagataatgttacttgag 55174966  T
Q  116 tttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55174965 tttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctg 55174866  T
Q  216 agcaacattgttgacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtag 289  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55174865 agaaacatcgttgacattatctccattcacttcttgttctatatcacaaaatgtagaggcattgaccaaggtag 55174792  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 55178669 - 55178544
Alignment:
Q  95 aaaaagataatgttacttgagtttcggtgtttctttcccttacctgagcttcgagcatagatattttttccatgagctccgcattcttcttcctttccct 194  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||  |||||||||    
T  55178669 aaaaagataatgttac--gagtttcggtgtttctttcccttatctgagcttcgtgcattgatattttttccatgagctccgcatttttcagcctttccct 55178572  T
Q  195 ttccaactcggctgaaatctgagcaaca 222  Q
    |||||||||   |||||||| |||||||    
T  55178571 ttccaactccaatgaaatctcagcaaca 55178544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 50906856 - 50906734
Alignment:
Q  144 ttcgagcatagatattttttccatgagctccgcattcttcttcctttccctttccaactcggctgaaatctgagcaacattgttgac-attatctccatt 242  Q
    ||||||||| ||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||  ||||||||  |||||| ||||||||||||    
T  50906856 ttcgagcatcgatattttt-ccatgatctccacattcttctgcctttccctttccaactcggctgaaatacgagcaacaacgttgacaattatctccatt 50906758  T
Q  243 cacttcttgttctatatcacaaaa 266  Q
    | |||||| |||||| ||||||||    
T  50906757 cgcttcttattctatgtcacaaaa 50906734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 50906959 - 50906872
Alignment:
Q  19 tgtcattctttcactctagatgtcagcttttattgaatat-aaacaagtcaacacttatttaagcaaagtacaaataaaaaagataat 105  Q
    ||||||||||||||||||||||| ||||||| |||| ||| |||  |||||||||||||||||| ||||||| ||||| |||||||||    
T  50906959 tgtcattctttcactctagatgttagcttttgttgattataaaatgagtcaacacttatttaagtaaagtacgaataagaaagataat 50906872  T

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