View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_66 (Length: 290)
Name: NF20321_high_66
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 4893554 - 4893813
Alignment:
| Q |
14 |
agagatagctatagcaccgaaatcagaaaccaaagagtacaccattattccaacnnnnnnnnggcacgtagtgtttggtttatcaatgctatgctttatt |
113 |
Q |
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| T |
4893554 |
agagatagctatagcaccgaaatcagaaaccaaagagtacaccattattccaaaaaaaaaaaggaacgtagtgtttggtttatcaatgctatgctttatt |
4893653 |
T |
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| Q |
114 |
gataattgaaaagaaagcatagttgtacgccatatatattgagtgtgggtgtgaccttatactgaaaaaagtcacacatatcatttattcattttatttc |
213 |
Q |
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| T |
4893654 |
gataattgaaaagaaagcatagttgtacgccatatatattgagtgtgggtgtgaccttatactgaaaaaagtcacacatatcattttttcattttattgc |
4893753 |
T |
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| Q |
214 |
ctggcttgattaacttcctaatagagctaattgaaaccgagaggatgtagaggtagaggt |
273 |
Q |
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| T |
4893754 |
ctggcttgattaatttcctaatagagctaattgaaaccgagaggatgaagaggtagaggt |
4893813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 4874813 - 4875010
Alignment:
| Q |
77 |
gcacgtagtgtttggtttatcaatgctatgctttattgataattgaaaagaaagcatagttgtacgccatatat----------attgagtgtgggtgtg |
166 |
Q |
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| T |
4874813 |
gcacgtggtgtatggtttatcaaagctatgctttattgataattgaaaagaaagcatagttgtacgctatacaggtccttcatcatcgagtgtgggtgtg |
4874912 |
T |
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| Q |
167 |
accttatactgaaaaaagtcacacatatcatttattcattttatttcctggcttgattaacttcctaatagagctaattgaaaccgagaggatgtaga |
264 |
Q |
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| T |
4874913 |
accttatactcaaaaaagtcacacatatcattttttctttttattgccaagcttgattaatttcctaatagagctaattgaaaccgagaggaggtaga |
4875010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 4873979 - 4874039
Alignment:
| Q |
89 |
tggtttatcaatgctatgctttattgataattgaaaagaaagcatagttgtacgccatata |
149 |
Q |
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| T |
4873979 |
tggtttatcaaagctatgctttattgataattgaaaagaaggcatagttgtacgctatata |
4874039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 267
Target Start/End: Complemental strand, 4646442 - 4646331
Alignment:
| Q |
154 |
gagtgtgggtgtgaccttatactgaaaaaagtcacacatatcatttattcattttatttcctggcttgattaacttcctaatagagctaattgaaaccga |
253 |
Q |
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| T |
4646442 |
gagtgtgggtgtgaccttatattgaaaaa-gtcacgcatg-cattttttctttttattaccagccatgattaatttcctaatagggctaattgaaactga |
4646345 |
T |
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| Q |
254 |
gaggatgtagaggt |
267 |
Q |
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| T |
4646344 |
caggaggtagaggt |
4646331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 4883867 - 4883981
Alignment:
| Q |
151 |
attgagtgtgggtgtgaccttatactgaaaaaagtcacacatatcatttattcattttatttcctggcttgattaacttcctaatagagctaattgaaac |
250 |
Q |
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| T |
4883867 |
attgactgtgggagtgaccttatattgaaaaa-gtcacacatatacttttatctttttattaccagccataattaatttcctaatagggctaattgaaac |
4883965 |
T |
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| Q |
251 |
cgagaggatgtagagg |
266 |
Q |
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| T |
4883966 |
cgagatgaggtagagg |
4883981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 4873899 - 4873952
Alignment:
| Q |
14 |
agagatagctatagcaccgaaatcagaaaccaaagagtacaccattattccaac |
67 |
Q |
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| T |
4873899 |
agagatagctgcagcacctaaatcagaaaccaaagagtataccattattccaac |
4873952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 4905096 - 4905200
Alignment:
| Q |
151 |
attgagtgtgggtgtgaccttatactgaaaaaagtcacacatatcatttattcattttatttcctggcttgattaacttcctaatagagctaattgaaac |
250 |
Q |
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| T |
4905096 |
attgactgtgggtgtgaccttatattg-aaaaagtcacacatgtttttttatctttttattaccagccatgactaatttcctaatagggttaattgaaac |
4905194 |
T |
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| Q |
251 |
cgagag |
256 |
Q |
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| T |
4905195 |
cgagag |
4905200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 9112610 - 9112562
Alignment:
| Q |
216 |
ggcttgattaacttcctaatagagctaattgaaaccgagaggatgtaga |
264 |
Q |
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| T |
9112610 |
ggcttgattaatttcctaatagggctaattgaaatcgagaggatttaga |
9112562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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