View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_high_77 (Length: 275)

Name: NF20321_high_77
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_high_77
NF20321_high_77
[»] chr8 (16 HSPs)
chr8 (15-260)||(36188578-36188823)
chr8 (15-186)||(36210011-36210182)
chr8 (15-186)||(36213353-36213524)
chr8 (15-186)||(36196896-36197070)
chr8 (18-186)||(36201070-36201238)
chr8 (15-187)||(36199045-36199217)
chr8 (15-179)||(36207924-36208088)
chr8 (16-179)||(36184741-36184904)
chr8 (15-179)||(36202452-36202616)
chr8 (183-260)||(36210227-36210304)
chr8 (183-256)||(36213569-36213642)
chr8 (183-256)||(36201283-36201356)
chr8 (208-256)||(36214838-36214886)
chr8 (197-256)||(36197123-36197182)
chr8 (186-245)||(36202671-36202730)
chr8 (186-256)||(36183542-36183612)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 36188578 - 36188823
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  36188578 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcagg 36188677  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaaaattgagacctattgcatagccaattt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36188678 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaaaattgagacctattgcatagccaattt 36188777  T
Q  215 ctgtttgaatctttgtaatgtctggcttctttgttacagttgttgt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36188778 ctgtttgaatctttgtaatgtctggcttctttgttacagttgttgt 36188823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 36210011 - 36210182
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  36210011 agatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcagg 36210110  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210111 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 36210182  T

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Target: chr8; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 36213353 - 36213524
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36213353 agatgtgagtaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaatcgagtctcccatgaagatcatacattacaatcagg 36213452  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| | |||||||||||    
T  36213453 actgtttgcagctctttcatcttagcacaaataagatgagctctttctgcagttgtcactgttttactatta 36213524  T

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Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 36196896 - 36197070
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaagggg---acaccaatctcacctaaattgagtctcccatgaagatcatacattacaatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||| |||||||||| |||||||||||| |||||      
T  36196896 agatgtgagcaatatcttgcaaccattatgatcttcaccaaagggggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaact 36196995  T
Q  112 aggactgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||  ||||||||| ||||||    
T  36196996 aggactgtttgcagctctttcatcttagcacacaaaagatgagctctttctgcagttgccattctttttctatta 36197070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 36201070 - 36201238
Alignment:
Q  18 tgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcaggact 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||  | ||| |||||||||||||||| |||||  ||||||    
T  36201070 tgtgagcaataccttgcaaccattatgatcttcaccaaaggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggact 36201169  T
Q  118 gtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactatta 186  Q
    ||||||||||| |||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||    
T  36201170 gtttgcagctccttcatcttagcacaaataagatgagctctatctgcagttgtcattcttttactatta 36201238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 36199045 - 36199217
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||  ||||| |||| ||||||||||| |||||  |||    
T  36199045 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactagg 36199144  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaa 187  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||| |||| ||| ||||||| ||||||    
T  36199145 actgtttgcagctctttcatcttagcacacagaagaagagctctttctgtagttgtcaatcttttattattaa 36199217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 36207924 - 36208088
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||| |||||  ||     
T  36207924 agatgtcagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcatacagtacaactagt 36208023  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattctttt 179  Q
    ||||||||||| |  || ||||||||||| ||||||  |||||||||||||||| ||||||||||    
T  36208024 actgtttgcagtttctttatcttagcacacagaagaagagctctttctgcagttgtcattctttt 36208088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 36184741 - 36184904
Alignment:
Q  16 gatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||| ||| |||||  || |    
T  36184741 gatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagta 36184840  T
Q  116 ctgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattctttt 179  Q
    |||||||||| || || |||||||| || ||||||  |||||||||||||||| ||||||||||    
T  36184841 ctgtttgcagttcctttatcttagcgcacagaagaagagctctttctgcagttgtcattctttt 36184904  T

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Target: chr8; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 36202452 - 36202616
Alignment:
Q  15 agatgtgagcaatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaattgagtctcccatgaagatcatacattacaatcagg 114  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||| |||||  ||||| ||||| ||||||||||||||||  |||    
T  36202452 agatgtcagcaatatcttgcaacccttatgatcttcaccaaagggcataccaatttcacttaaatcaagtctaccatggagatcatacattacaactagg 36202551  T
Q  115 actgtttgcagctctttcatcttagcacaaagaagatcagctctttctgcagttatcattctttt 179  Q
    |||||||||||||| |||||||||||||| || |||  |||||||||||||||| | ||||||||    
T  36202552 actgtttgcagctccttcatcttagcacacagtagaagagctctttctgcagttcttattctttt 36202616  T

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Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 36210227 - 36210304
Alignment:
Q  183 attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgt 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36210227 attaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgt 36210304  T

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Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 36213569 - 36213642
Alignment:
Q  183 attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||| |||||||    
T  36213569 attaaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaatgtctggcttctttgtcacagttg 36213642  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 36201283 - 36201356
Alignment:
Q  183 attaaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||||||||||||||||  ||||| | ||||||||||||  |||||||||||||||| || |||||||    
T  36201283 attaaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttg 36201356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 36214838 - 36214886
Alignment:
Q  208 ccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  36214838 ccaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttg 36214886  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 36197123 - 36197182
Alignment:
Q  197 ctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||  ||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  36197123 ctattgcatcaccaattagtgtttgaatctttgtaatgtctggcttctttgtcacagttg 36197182  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 36202671 - 36202730
Alignment:
Q  186 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctt 245  Q
    |||||| |||| ||||||||  ||||||| ||||||||||| ||||||||||||||||||    
T  36202671 aaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 36202730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 36183542 - 36183612
Alignment:
Q  186 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttg 256  Q
    |||||||||||||||||||   ||||||| |||| |||||| |||||||||  |||||| ||| |||||||    
T  36183542 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttg 36183612  T

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