View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_8 (Length: 616)
Name: NF20321_high_8
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Complemental strand, 8549111 - 8548512
Alignment:
| Q |
10 |
agcagcacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatacacagttgaaaaaccaatgaagtcctcctcaaaccct |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8549111 |
agcaacacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatgcacagttgaaaaaccaatgaagtcctcctcaaaccct |
8549012 |
T |
|
| Q |
110 |
cttatcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8549011 |
cttatcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtc |
8548912 |
T |
|
| Q |
210 |
cacctttcnnnnnnnn-------gaaagaactct-aagtccacctnnnnnnngtaatttacactctccattctannnnnnnnctaaatacctaacggtta |
301 |
Q |
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|| |||| ||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
8548911 |
caactttttttttttttttttttgaaagaactcttaagtccacctaaaaaaagtaatatacactctccattctatttttttcttaaatacctaatggtta |
8548812 |
T |
|
| Q |
302 |
gactcacacactataaatactgaaaagaggagaacttgaaattcgaactccgacctcctctatggcaatgttcatagagctgccattttagcacgcactt |
401 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8548811 |
gactcacacactataaatactgagaagaggagaacttgaaattcgaactccgacctcctctacggcaatgttcatagagctgccattttagcacgcactt |
8548712 |
T |
|
| Q |
402 |
ataaaacattctcgattctatattacataagtcattttagcacaaaaaattgctcaatttataagttattttataatatcatcgagtattatttccaccc |
501 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8548711 |
ataaaacactctcgattctatattacataagtcattttagcactaaaaattgctcaatttataagttattttataatatcattgagtattatttccaccc |
8548612 |
T |
|
| Q |
502 |
ctattattttacccttaatctctctttagagtattcttttcaattcttgtaattgtattttttaattgtcaatgcaagttggtccatttggtatgaattt |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548611 |
ctattattttacccttaatctctctttagagtattcttttcaattcttgtaattgtattttttaattgtcaatgcaagttggtccatttggtatgaattt |
8548512 |
T |
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