View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_81 (Length: 267)
Name: NF20321_high_81
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_81 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 38456497 - 38456731
Alignment:
| Q |
23 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38456497 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
38456596 |
T |
|
| Q |
123 |
tgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatattcatatacctatagctctaccct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456597 |
tgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatattcatatacctatagctctaccct |
38456696 |
T |
|
| Q |
223 |
caccatgttcataccttccacttccttcacctatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
38456697 |
caccatgttcataccttccacttccttcacctatg |
38456731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 38181137 - 38181370
Alignment:
| Q |
23 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181137 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
38181236 |
T |
|
| Q |
123 |
tgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatattcatatacctatagctctaccct |
222 |
Q |
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|
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181237 |
tgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatattcatatacctatagctctaccct |
38181335 |
T |
|
| Q |
223 |
caccatgttcataccttccacttccttcacctatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
38181336 |
caccatgttcataccttccacttccttcacctatg |
38181370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 38189994 - 38189761
Alignment:
| Q |
23 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38189994 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
38189895 |
T |
|
| Q |
123 |
tgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatattcatatacctatagctctaccct |
222 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38189894 |
tgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatattcatatacctatagctctaccct |
38189796 |
T |
|
| Q |
223 |
caccatgttcataccttccacttccttcacctatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189795 |
caccatgttcataccttccacttccttcacctatg |
38189761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 38208361 - 38208594
Alignment:
| Q |
23 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38208361 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
38208460 |
T |
|
| Q |
123 |
tgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatattcatatacctatagctctaccct |
222 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38208461 |
tgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatattcatatacctatagctctaccct |
38208559 |
T |
|
| Q |
223 |
caccatgttcataccttccacttccttcacctatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208560 |
caccatgttcataccttccacttccttcacctatg |
38208594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 38217219 - 38216986
Alignment:
| Q |
23 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38217219 |
agatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaaaat |
38217120 |
T |
|
| Q |
123 |
tgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatattcatatacctatagctctaccct |
222 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38217119 |
tgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattggaacttctcatattcatatacctatagctctaccct |
38217021 |
T |
|
| Q |
223 |
caccatgttcataccttccacttccttcacctatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
38217020 |
caccatgttcataccttccacttccttcacctatg |
38216986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 26033099 - 26032886
Alignment:
| Q |
23 |
agatgttccaaacatgttctacaataat---gtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaa |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26033099 |
agatgtcccaaacatgttctacaataatattgtgggaagtacttcaacattgattgataggtgagtagattatgtaattccattttcttttatatgttaa |
26033000 |
T |
|
| Q |
120 |
aattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattggaacttctcatattcatatacctatagctctac |
219 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||| | |||||||||| |||| || |
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|
| T |
26032999 |
aattgtttatacgag-gtgttaaatttactgttactttcattaatttcaggg---gaagcattattggaacttc------ttatatacctatggctccac |
26032910 |
T |
|
| Q |
220 |
cctcaccatgttcataccttccac |
243 |
Q |
| |
|
|| ||||||||||||||||||||| |
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|
| T |
26032909 |
ccccaccatgttcataccttccac |
26032886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 38447655 - 38447688
Alignment:
| Q |
31 |
caaacatgttctacaataatgtgggaagtacttc |
64 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
38447655 |
caaatatgttctacaataatgtgggaagtacttc |
38447688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 38343008 - 38343063
Alignment:
| Q |
59 |
tacttcaacattgattgataggtgagtagattatgtaattccattttcttttatat |
114 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
38343008 |
tacttctacattgattgataggtgagttgattatgcaatgccattctcttttatat |
38343063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 38447201 - 38447256
Alignment:
| Q |
59 |
tacttcaacattgattgataggtgagtagattatgtaattccattttcttttatat |
114 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
38447201 |
tacttctacattgattgataggtgagttgattatgcaatgccattctcttttatat |
38447256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 6067784 - 6067743
Alignment:
| Q |
23 |
agatgttccaaacatgttctacaataatgtgggaagtacttc |
64 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
6067784 |
agatgtcccaaacatgttctacaataacgtgggaagtacttc |
6067743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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