View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_82 (Length: 264)
Name: NF20321_high_82
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_82 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 2411987 - 2412219
Alignment:
| Q |
20 |
agacgccaccacagttaaatgtatgctttgtaactgccatatacttggaataggttgtaagtaagaatgttatagatgtcacatactgaagattgcttgc |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411987 |
agacgccaccacagttaaatgtatgctttgtagctgccatatacttggagtaggttgtaagtaagaatgttatagatgtcacatactgaagattgcttgc |
2412086 |
T |
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| Q |
120 |
aggtaacttgaacatgagtccccctgcacattaattcaagcaatacatgatacaacaccctttataatactctataagccctattgatttgaaatttatg |
219 |
Q |
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| T |
2412087 |
aggtaacttgaacatgagtccccctgcacattaattcaagcaatacatgatacaacaccctttataatactctataagccctattgatttgaaatttatg |
2412186 |
T |
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| Q |
220 |
tcatttcacattttcatgaaatcattttatatt |
252 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
2412187 |
tcattttacattttcatgaaatcattttatatt |
2412219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 14372 - 14490
Alignment:
| Q |
20 |
agacgccaccacagttaaatgtatgctttgtaactgccatatacttggaataggttgtaagtaagaatgttatagatgtcacatactgaagattgcttgc |
119 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14372 |
agacgccaccacagttaaatgtgtgctttgtagctgccatatacttggaataggttgtaagtaagaatgttatagatgtcacatactgaagattgcttgc |
14471 |
T |
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| Q |
120 |
aggtaacttgaacatgagt |
138 |
Q |
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||||||||||||||||||| |
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| T |
14472 |
aggtaacttgaacatgagt |
14490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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