View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_89 (Length: 246)
Name: NF20321_high_89
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 41306456 - 41306238
Alignment:
| Q |
12 |
atagggcatatgagacgagtaagtaccgaaaagatgcaaagtccaagcattttgagagcaagactgatatcataaaaaacaagggccttcctttgcttaa |
111 |
Q |
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| T |
41306456 |
atagggcatatgagacgagtaagtaccgaaaagatgcaaagtccaagcattttgagagcaagactgatatcataaaaaacaagggccttcctttgcttaa |
41306357 |
T |
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| Q |
112 |
caattcacaggattagcaaccagcaactctgtatcgagtccctggctcgcaatagctactttgagtggacatagtaattccatcttaagacgcaatgaca |
211 |
Q |
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| T |
41306356 |
caattcacaggattagcaaccagcaactctgtatcgggtccctggctcgcaatagctactttgagtggacatagtaattccatcttaagacgcaatgaca |
41306257 |
T |
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| Q |
212 |
aagatttttgccttgaatg |
230 |
Q |
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| T |
41306256 |
aagatttttgccttgaatg |
41306238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 41301782 - 41301632
Alignment:
| Q |
28 |
gagtaagtaccgaaaagatgcaaagtccaagcattttgagagcaagactgatatcataaaaaac-aagggccttcctttgcttaacaatt-cacaggatt |
125 |
Q |
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| T |
41301782 |
gagtaaataccgaaaagatgcaaagtccaagcattttgagagcaagagtgatatcataaaatactaggggccttcctttgccagacaattccacagggtt |
41301683 |
T |
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| Q |
126 |
agcaaccagcaactctgtatcgagtccctggctcgcaatagctactttgag |
176 |
Q |
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| T |
41301682 |
tgcaaccagcaactgtgtatcaggtcccctgctcacaacagctactctgag |
41301632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 27662382 - 27662438
Alignment:
| Q |
35 |
taccgaaaagatgcaaagtccaagcattttgagagcaagactgatatcataaaaaac |
91 |
Q |
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| T |
27662382 |
taccgaaaatatgcaaacatcgagcattttgagagcaagagtaatatcataaaaaac |
27662438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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