View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_90 (Length: 240)
Name: NF20321_high_90
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 52150413 - 52150218
Alignment:
| Q |
26 |
ttacattaggttacattgaaattgtgcaaatcttgcagcctctcgcgtgtttttgacctatctccatatttcaaacttggaaatggctttaccttcctcc |
125 |
Q |
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| T |
52150413 |
ttacattaggttacatcgaaattgtgcaaatcttgcagcctctcgcgtgtttttgacctatctccatatttcaaacttggaaatggctttaccttcctcc |
52150314 |
T |
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| Q |
126 |
tccaagtccaaattaaccatgacgcttatcattcacacaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtagatattcttctc |
221 |
Q |
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| T |
52150313 |
tccaagtccaaattaaccatgacgcttatcattgacacaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtagatattcttctc |
52150218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 52145798 - 52145749
Alignment:
| Q |
162 |
acaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtaga |
211 |
Q |
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|||||||| ||||||||||||||||||||| | |||||| ||||| |||| |
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| T |
52145798 |
acaaagaatgagaaagttctctttgctgaagcttcaaaatctgtaataga |
52145749 |
T |
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