View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_93 (Length: 233)
Name: NF20321_high_93
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_93 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 2601277 - 2601476
Alignment:
| Q |
17 |
agtaagataaaatgaataatcatacccctcattgtatatttatgtgtcatttatgatttattactaatctttatattgttctcaggaaatctattctatt |
116 |
Q |
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| T |
2601277 |
agtaagataaaatgaataatcgtacc-----ttatatatttatgtgtcaattatgatttattactaatctttatattgttctcaggaaatctattctatt |
2601371 |
T |
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| Q |
117 |
taacttgaatgaattcaatataaacagttaaaactataaagtcggaagaatctaagaaaacaaaaattgcccaaatctatccatagatatgtgcttgaat |
216 |
Q |
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| T |
2601372 |
taacttgaatgcattcaatataaacagttaaaactataaagtcggaagaatctaggaaaacaaaaattgcccaattctatccatagatatgtgcttgaat |
2601471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 2614769 - 2614965
Alignment:
| Q |
34 |
aatcatacccctcattgtatatttatgtgtcatttatgatttattactaatctttatattgttctcaggaaatctattctatttaacttgaatgaattca |
133 |
Q |
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| T |
2614769 |
aatcatacccctcgtcgtatatttacgtgtcatttatgatttgttactaatctttatattgttctcaagaaatctattctatttaccttgaatgcattca |
2614868 |
T |
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| Q |
134 |
atataaacagttaaaactataaagtcggaagaatctaagaa---------aacaaaaattgcccaaatctatccatagatatgtgcttgaatatatt |
221 |
Q |
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| T |
2614869 |
atataaatggttaaatctataaagtcgggggaatctaggaacccttcttcaacaaaaattgcccaactctatccatagatatgtgcttgaatatatt |
2614965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 22199218 - 22199014
Alignment:
| Q |
25 |
aaaatgaataatcatacccctcattgtatatttatgtgtcatttatgatttattactaatctttatattgttctcaggaaatctattctatttaacttga |
124 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| | ||||||||| | |||| ||||||||||||| |||| |
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| T |
22199218 |
aaaatgaataatcatacccctcgttgtatatttatgtgtcatt-atgatttattactgatcactgtattgttctaaagaaaactattctatttaatttga |
22199120 |
T |
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| Q |
125 |
atgaattcaatataaacagttaaaactataaagtcggaagaatctaagaa---------aacaaaaattgcccaaatctatccatagatatgtgcttgaa |
215 |
Q |
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||| ||||||||||||||||| || |||||||||||| ||||||| ||| |||||||||| ||||| ||||||||||||||||||||| || |
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| T |
22199119 |
atgcattcaatataaacagttgaatctataaagtcgggggaatctaggaacttctcttcaacaaaaatttcccaactctatccatagatatgtgcttcaa |
22199020 |
T |
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| Q |
216 |
tatatt |
221 |
Q |
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|||||| |
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| T |
22199019 |
tatatt |
22199014 |
T |
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