View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_high_97 (Length: 223)
Name: NF20321_high_97
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_high_97 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 21311871 - 21311688
Alignment:
| Q |
20 |
ctatggcataaatagttgagcttgaacgtcccaacacattccaatggacatcaaaactacacacgtgagaagtacataattacttaactaggattaaact |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21311871 |
ctatggcataaagagttgagcttgaacgtcccaacacattctaatgga--tcaaaactacacacgtgagatgtacataattacttaactaggattaaact |
21311774 |
T |
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| Q |
120 |
taatatcatgctttgaccataatagttgcaaattgaactaaattagaaactaggagaatgaaagaagcaaagtcaagggtaatatc |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||| ||| |||||||||||| |
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| T |
21311773 |
taatatcatgctttgaccataatagttgcaaactgaactaaattaggaacttggagaaggaaagaagcagagttaagggtaatatc |
21311688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 38351349 - 38351159
Alignment:
| Q |
15 |
taattctatggcataaatagttgagcttgaacgtcccaacacattccaatggacatcaaaactacacacgtgagaagtacataattacttaactaggatt |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
38351349 |
taatgctatggcataaatagttgagcttgaacgtcccaacatattctaattgacatcaaaactacacacgtgagatgtacataattacttaactatgatt |
38351250 |
T |
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| Q |
115 |
aaacttaatatcatgctttgaccataatagttgcaaattgaactaaattagaaactaggagaatgaaagaagcaaagtcaagggtaatatc |
205 |
Q |
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| T |
38351249 |
aaacttaatatcatgctttgaccataatagttgcaaagtgaactaaattaggaacctggagaaggaaagaagcagagttaagggtaatatc |
38351159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 4940784 - 4940596
Alignment:
| Q |
20 |
ctatggcataaatagttgagcttgaacgtcccaacacattccaatggacatcaaaactacacacgtgagaagtacataattacttaactaggattaaac- |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4940784 |
ctatggcataaatagctgagcttgaacgtcccaacacattctaatggacatcaaaactacacacgtgagatgtacataattacttaactaggattaaact |
4940685 |
T |
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| Q |
119 |
--ttaatatcatgctttgaccataatagttgcaaattgaactaaattagaaactaggagaatgaaagaagcaaagtcaagggtaatatc |
205 |
Q |
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||||||||||||||||||||||||||||| | | |||| |||||||| ||| |||||| |||||||||| ||| ||| |||||||| |
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| T |
4940684 |
aattaatatcatgctttgaccataatagttggagagtgaagtaaattaggaacctggagaaggaaagaagcagagttaagagtaatatc |
4940596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 40125713 - 40125899
Alignment:
| Q |
20 |
ctatggcataaatagttgagcttgaacgtcccaacacattccaatggacatcaaaactacacacgtgagaagtacataattacttaactaggattaaact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||| ||| ||| || ||||| |||||||||||| |
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| T |
40125713 |
ctatggcataaatagttgagcttgaacgtcccaacacattctaatcgacatcaaaattacacaagtgagatgtaaatacttgcttaattaggattaaact |
40125812 |
T |
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| Q |
120 |
taatatcatgctttgaccataatagttgcaaat-tgaactaaattagaaactaggagaatgaaagaagcaaagtcaagggtaatatc |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||| ||| |||||||||||| |
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| T |
40125813 |
taatatcatgctttgaccataatagttgcaaatgcgaactaaattaggaacctggagaaggaaagaagcggagttaagggtaatatc |
40125899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 40137745 - 40137785
Alignment:
| Q |
20 |
ctatggcataaatagttgagcttgaacgtcccaacacattc |
60 |
Q |
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||||||||||||| |||||||| || ||||||||||||||| |
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| T |
40137745 |
ctatggcataaatggttgagctcgatcgtcccaacacattc |
40137785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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