View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_10 (Length: 584)
Name: NF20321_low_10
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Original strand, 34122524 - 34123077
Alignment:
| Q |
17 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
116 |
Q |
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| T |
34122524 |
tatatgggaaagatgttgtaataagaatcatcaatagatgaacaataacaacaatgtccatcaatgtatagtgtcattcttagggtaacatatttttggt |
34122623 |
T |
|
| Q |
117 |
tgattgaaaaattcattttatttttataacaggagaaatattatcaataccgtactctgctataattcaagtcactagacatacccgtgtgacacacgga |
216 |
Q |
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| T |
34122624 |
tgattgaaaaattcattttatttttataacaggagaaatattatcaataccgtactatgctataattcaagtcactagacatacccgtgtgacacacgga |
34122723 |
T |
|
| Q |
217 |
taaaattttattatatacaattttattaatatagtaatatactaatagagtgttcctgacactattcatgtgtacttagtgagataatactttaattatt |
316 |
Q |
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| T |
34122724 |
taaaattttattatatacaattttattaatatagtaatatactaatagggtgttcctgacactattcatgtgtacttagtgagataatactttaattatt |
34122823 |
T |
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| Q |
317 |
atatttggtccaacatatacattgagtattagactatatctgcgatcttgatcgaattagattaggatattagaagttaaagtttcacgcaaacaagaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34122824 |
atatttggtccaacatatacattgagtattagactatatctgcgatcttgatcgaattagattaggatattagaagttaaagtttcacgcaaacaagaat |
34122923 |
T |
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| Q |
417 |
tcatgagtttaagaattaagaaacctagttaatgtcatt--nnnnnnnnnnnnntatttcttgatttcaagctttcggttttcttcatttttatagtcta |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34122924 |
tcatgagtttaagaattaagaaacctagttaatgtcattaaaaaaaaatatatatatttcttgatttcaagctttcggttttcttcatttttatagtcta |
34123023 |
T |
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| Q |
515 |
aattcatttctatatttcattctaatggttcgcacaaccctcttcataatttct |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34123024 |
aattcatttctatatttcattctaatggttcgcacaaccctcttcagaatttct |
34123077 |
T |
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