View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_102 (Length: 217)
Name: NF20321_low_102
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_102 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 6818484 - 6818304
Alignment:
| Q |
14 |
aagaatatcctactcaccgtctgcgggggtgtcttttccatatggttgacctcaagttccacctatatacttgattattcaatgactccaatgttgctgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6818484 |
aagaatatcctactcaccgtctgcgggggtgtcttttccatatggttgacctgaagttctac----atacttgattattcaatgactccaatgttgctgt |
6818389 |
T |
|
| Q |
114 |
ccacgagtttggacttaggatacttacattcaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtatt |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6818388 |
ccacgagtttggactttggatacttacattaaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtatt |
6818304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 6808289 - 6808108
Alignment:
| Q |
14 |
aagaatatcctactcaccgtctgcgggggtgtcttttccatatggt--------tgacctcaagttccacctatatacttgattattcaatgactccaat |
105 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
6808289 |
aagaatatcctattcaccggctgcgggggtgtcttttccatatggtattatggttgacctcaagttccac----atacttggttattcaatg-------- |
6808202 |
T |
|
| Q |
106 |
gttgctgtccacgagtttggacttaggata--cttacattcaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtatt |
198 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6808201 |
-ttgctttccacgagtttgggctttggatagacttacattgaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtatt |
6808108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University