View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_104 (Length: 215)
Name: NF20321_low_104
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_104 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 2050052 - 2050237
Alignment:
| Q |
15 |
aatatcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggt |
114 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2050052 |
aatatcaaggaagcatgtgaaacttggggtttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggggtgaaaaggt |
2050151 |
T |
|
| Q |
115 |
tttatgaacaggatacagaagccnnnnnnngtttgtatacaagagatatgaatagatcctttgtttataatagtaattttgatatt |
200 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2050152 |
tttatgaacaggctacagaagccaaaaaaagtttgtatacaagagatatgaatagatcctttgtttataatagtaattttgatatt |
2050237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 2032811 - 2032996
Alignment:
| Q |
15 |
aatatcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||| |
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| T |
2032811 |
aatatcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggtgtcaagaggt |
2032910 |
T |
|
| Q |
115 |
tttatgaacaggatacagaagccnnnnnnngtttgtatacaagagatatgaatagatcctttgtttataatagtaattttgatatt |
200 |
Q |
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| T |
2032911 |
tttatgaacaggatacagaagtcaaaaaagaattgtatactagaaatagcaatagatcctttgtttataatagtaattttgatatt |
2032996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 2054062 - 2054243
Alignment:
| Q |
19 |
tcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggtttta |
118 |
Q |
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||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
2054062 |
tcaaggaagcatgtgaaacattaggtttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagttgaatgatggggtgaaaaggtttta |
2054161 |
T |
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| Q |
119 |
tgaacaggatacagaagccnnnnnnngtttgtatacaagagatatgaatagatcctttgtttataatagtaattttgatatt |
200 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| | ||||||||| |||| ||||| ||| |||||||| |
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| T |
2054162 |
tgaacaggatacagaagccaaaaaaagtttctatacaagagatatgcagagatcctttatttacaatagcaatgttgatatt |
2054243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 2036869 - 2037051
Alignment:
| Q |
18 |
atcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggtttt |
117 |
Q |
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|||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2036869 |
atcaaggaagcatgtgaaacattaggtttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggggtgaaaaggtttt |
2036968 |
T |
|
| Q |
118 |
atgaacaggatacagaagccnnnnnnngtttgtatacaagagatatgaatagatcctttgtttataatagtaattttgatatt |
200 |
Q |
| |
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||||||| || ||||||| | ||| ||||||||||||||||||||||| ||| |||| ||||| |||| ||||||| |
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| T |
2036969 |
atgaacaagacacagaagtcaaaaaagatttttatacaagagatatgaatagatcttttatttacaatagcaattatgatatt |
2037051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 2046246 - 2046428
Alignment:
| Q |
18 |
atcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggtttt |
117 |
Q |
| |
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|||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2046246 |
atcaaggaagcatgtgaaacattaggtttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggggtgaaaaggtttt |
2046345 |
T |
|
| Q |
118 |
atgaacaggatacagaagccnnnnnnngtttgtatacaagagatatgaatagatcctttgtttataatagtaattttgatatt |
200 |
Q |
| |
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||||||| || ||||||| | ||| ||||||||||||||||||||||| ||| |||| ||||| |||| ||||||| |
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| T |
2046346 |
atgaacaagacacagaagtcaaaaaagatttttatacaagagatatgaatagatcttttatttacaatagcaattatgatatt |
2046428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 10767456 - 10767635
Alignment:
| Q |
21 |
aaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggttttatg |
120 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||| |
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| T |
10767456 |
aaggaagcatgtgaaacatgggggttttttcaagttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggtgttaagaggttttatg |
10767555 |
T |
|
| Q |
121 |
aacaggatacagaagccnnnnnnngtttgtatacaagagatatgaatagatcctttgtttataatagtaattttgatatt |
200 |
Q |
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| ||||||||||||| | ||||||||||||||||| ||| ||||||| |||| |||||||| ||||||||| |
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| T |
10767556 |
agcaggatacagaagtcaaaaaagatttgtatacaagagatagacataaatcctttatttacaatagtaactttgatatt |
10767635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 1950718 - 1950615
Alignment:
| Q |
18 |
atcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggtttt |
117 |
Q |
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|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||| |||||| |
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| T |
1950718 |
atcaaggaagcatgtgaaacttgggggttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagatgaaggatggtgtgaagaggtttc |
1950619 |
T |
|
| Q |
118 |
atga |
121 |
Q |
| |
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|||| |
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| T |
1950618 |
atga |
1950615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 2028278 - 2028381
Alignment:
| Q |
18 |
atcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatggggtgaaaaggtttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||| |||||| |
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| T |
2028278 |
atcaaggaagcatgtgaaacttgggggttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagatgaaggatggtgtgaagaggtttc |
2028377 |
T |
|
| Q |
118 |
atga |
121 |
Q |
| |
|
|||| |
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|
| T |
2028378 |
atga |
2028381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 48908973 - 48908894
Alignment:
| Q |
24 |
gaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaaggagttgaaagatgg |
103 |
Q |
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|||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
48908973 |
gaagcatgtgaaacatggggtttttttcaggttgttaatcatggaatccctttgaacattcttgaggaattgaaagatgg |
48908894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 28786385 - 28786317
Alignment:
| Q |
23 |
ggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgttcttaagga |
91 |
Q |
| |
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|||||||||||| || |||||||| || ||||| || |||||||| || ||||||| ||||||| |||| |
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| T |
28786385 |
ggaagcatgtgagacatggggtttctttcaagtggtcaatcatggcattcctttgaatgttcttgagga |
28786317 |
T |
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