View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_105 (Length: 211)
Name: NF20321_low_105
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_105 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 37240141 - 37239973
Alignment:
| Q |
29 |
agttatgcaccatgaacaacatgttttgatgcactttcaccaatgcggtttgcaatcacaatctctgcctctcctgaatgaacattttaatccaagttat |
128 |
Q |
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| T |
37240141 |
agttatgcaccatgaacaacatgttttgatgcactttcaccaatgctgcttgcaatcacaatctctgcctctcctgaatgaacattttaatccaagttat |
37240042 |
T |
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| Q |
129 |
caaataaagtaaatttcattatggaaaaattaagaaaatagctactttttaaatattccatgtgtatat |
197 |
Q |
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| T |
37240041 |
caaataaagtaaatttcattatggaaaaattaagaaaatagctactttttaaatattccatgtgtatat |
37239973 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 37231954 - 37231901
Alignment:
| Q |
81 |
caatcacaatctctgcctctcctgaatgaacattttaatccaagttatcaaata |
134 |
Q |
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|||||||||||||||| |||||||||| ||||||||| | |||||||||||| |
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| T |
37231954 |
caatcacaatctctgcttctcctgaatccacattttaaccagagttatcaaata |
37231901 |
T |
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