View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_11 (Length: 576)
Name: NF20321_low_11
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 12 - 560
Target Start/End: Complemental strand, 30959348 - 30958799
Alignment:
| Q |
12 |
atgaacttgagactcnnnnnnnattcaatatgaaaaataatagagaataacactgaaggtaatgaatcataatcttaccctagtagaccaagcgctactg |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30959348 |
atgaacttgagactctttttttattcaatatgaaaaataatagagaataacactgaaggtaatgaatcataatcttaccctagtagaccaagcgctgctg |
30959249 |
T |
|
| Q |
112 |
cggccttatacttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30959248 |
cggccttatacttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgtaagagaaatgttgtttgacatgatttccgc |
30959149 |
T |
|
| Q |
212 |
gaaattcacaaactaaagagatttcacaacaattcaggggatgaatttcaattattttgcaacatttaacaagtattaaatcaatattcattatctacct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959148 |
gaaattcacaaactaaagagatttcacaacaattcaggggatgaatttcaattattttgcaacatttaacaagtattaaatcaatattcattatctacct |
30959049 |
T |
|
| Q |
312 |
gaaaattatcaaaggccc-tagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaa |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959048 |
gaaaattatcaaaggcccttagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaa |
30958949 |
T |
|
| Q |
411 |
atttactgtggcaacaaagtaggcagataaataagacaagatatttgtaaagttacaacatttattattgagaataatcacctggcctcaacaatggcat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958948 |
atttactgtggcaacaaagtaggcagataaataagacaagatgtttgtaaagttacaacatttattattgagaataatcacctggcctcaacaatggcat |
30958849 |
T |
|
| Q |
511 |
ccattgnnnnnnnctcttgtggactaagccttccatgtcgagttcttgtt |
560 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958848 |
ccattgtttttctctcttgtggactaagccttccatgtcgagttcttgtt |
30958799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 349 - 457
Target Start/End: Complemental strand, 30955172 - 30955067
Alignment:
| Q |
349 |
aaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgtggcaacaaagtaggcagataaataagaca |
448 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||| |
|
|
| T |
30955172 |
aaactccttcaccatgtcccaaggtccatctccaacaccaaccaatatgattgaaagaggaaattttctgtg---acaaattaagcagataaataagaca |
30955076 |
T |
|
| Q |
449 |
agatatttg |
457 |
Q |
| |
|
||||||||| |
|
|
| T |
30955075 |
agatatttg |
30955067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 11688829 - 11688939
Alignment:
| Q |
122 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
221 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| | || ||||||||||| |||||||||||| ||| | || |||||||| || |||| |||||||||| |
|
|
| T |
11688829 |
cttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcaca |
11688928 |
T |
|
| Q |
222 |
aactaaagaga |
232 |
Q |
| |
|
||||||||||| |
|
|
| T |
11688929 |
aactaaagaga |
11688939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 308 - 419
Target Start/End: Original strand, 11689036 - 11689147
Alignment:
| Q |
308 |
acctgaaaattatcaaaggccctagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagag |
407 |
Q |
| |
|
||||| |||||||| ||||| | || ||||||||| || ||| || |||||| ||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
11689036 |
acctggaaattatcgaaggcacgagatggaatattatcgtcaaattctttcatcatgtcccatggtccatctccaacaccaaccaatataattgaaagag |
11689135 |
T |
|
| Q |
408 |
gaaatttactgt |
419 |
Q |
| |
|
||| ||||||| |
|
|
| T |
11689136 |
gaagcttactgt |
11689147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 307 - 420
Target Start/End: Complemental strand, 7474234 - 7474121
Alignment:
| Q |
307 |
tacctgaaaattatcaaaggccctagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgataga |
406 |
Q |
| |
|
||||||||||||||| |||||||| | ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
7474234 |
tacctgaaaattatcgaaggccctggctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaaga |
7474135 |
T |
|
| Q |
407 |
ggaaatttactgtg |
420 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7474134 |
ggaaatttactgtg |
7474121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 7474443 - 7474336
Alignment:
| Q |
122 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
221 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| | ||||| |||||||||| |
|
|
| T |
7474443 |
cttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgacataagttccgtgaaattcaca |
7474344 |
T |
|
| Q |
222 |
aactaaag |
229 |
Q |
| |
|
|||||||| |
|
|
| T |
7474343 |
aactaaag |
7474336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 44131205 - 44131152
Alignment:
| Q |
356 |
ttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagagga |
409 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
44131205 |
ttcatctcgtcccatggtccatctccaactccaaccaaaataattgagagagga |
44131152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University