View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20321_low_12 (Length: 552)

Name: NF20321_low_12
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20321_low_12
NF20321_low_12
[»] chr5 (9 HSPs)
chr5 (16-402)||(15117361-15117749)
chr5 (193-387)||(17099005-17099199)
chr5 (192-368)||(14053210-14053384)
chr5 (192-245)||(24880699-24880752)
chr5 (418-461)||(15115546-15115589)
chr5 (417-457)||(4967224-4967264)
chr5 (417-461)||(18150177-18150221)
chr5 (417-461)||(21371149-21371193)
chr5 (417-461)||(32697679-32697723)
[»] scaffold0259 (1 HSPs)
scaffold0259 (192-402)||(20107-20316)
[»] chr4 (17 HSPs)
chr4 (192-380)||(17870889-17871077)
chr4 (192-408)||(13959539-13959752)
chr4 (417-461)||(26974698-26974742)
chr4 (417-461)||(34789836-34789880)
chr4 (417-461)||(55677411-55677455)
chr4 (229-367)||(19567892-19568027)
chr4 (417-461)||(33689878-33689922)
chr4 (417-461)||(45838596-45838640)
chr4 (417-461)||(46737108-46737152)
chr4 (192-287)||(11864504-11864599)
chr4 (418-457)||(12593477-12593516)
chr4 (417-460)||(24851919-24851962)
chr4 (417-460)||(28465131-28465174)
chr4 (420-461)||(54440620-54440661)
chr4 (201-281)||(11426522-11426602)
chr4 (417-461)||(19528918-19528962)
chr4 (417-461)||(35193357-35193401)
[»] chr1 (20 HSPs)
chr1 (174-383)||(51110903-51111110)
chr1 (174-408)||(24549806-24550040)
chr1 (193-281)||(25124161-25124249)
chr1 (317-386)||(18838017-18838086)
chr1 (417-461)||(30786821-30786865)
chr1 (417-461)||(44582106-44582150)
chr1 (417-457)||(50304492-50304532)
chr1 (417-460)||(10278598-10278641)
chr1 (418-461)||(52335964-52336007)
chr1 (417-454)||(1837561-1837598)
chr1 (417-454)||(2867967-2868004)
chr1 (192-233)||(14911076-14911117)
chr1 (417-458)||(34555431-34555472)
chr1 (417-458)||(45048207-45048248)
chr1 (417-461)||(2868161-2868205)
chr1 (417-457)||(8230094-8230134)
chr1 (417-457)||(16298735-16298775)
chr1 (421-461)||(29438979-29439019)
chr1 (417-457)||(37421213-37421253)
chr1 (417-461)||(39485114-39485158)
[»] chr6 (6 HSPs)
chr6 (171-402)||(32669225-32669457)
chr6 (192-369)||(12464700-12464872)
chr6 (417-457)||(31073595-31073635)
chr6 (417-460)||(5120922-5120965)
chr6 (417-464)||(31574178-31574225)
chr6 (201-265)||(26947435-26947499)
[»] chr2 (19 HSPs)
chr2 (197-383)||(20376338-20376524)
chr2 (193-389)||(30947916-30948109)
chr2 (174-346)||(17364305-17364479)
chr2 (417-461)||(11540091-11540135)
chr2 (417-460)||(4808929-4808972)
chr2 (200-281)||(21690862-21690943)
chr2 (417-461)||(649576-649620)
chr2 (417-461)||(15550722-15550766)
chr2 (417-461)||(38007999-38008043)
chr2 (417-461)||(42192289-42192333)
chr2 (418-461)||(43216163-43216206)
chr2 (417-457)||(4355808-4355848)
chr2 (417-457)||(16175803-16175843)
chr2 (417-461)||(16953387-16953431)
chr2 (417-461)||(20128190-20128234)
chr2 (418-458)||(32418600-32418640)
chr2 (417-457)||(33920665-33920705)
chr2 (200-252)||(40584705-40584757)
chr2 (421-461)||(42192700-42192740)
[»] chr3 (23 HSPs)
chr3 (193-389)||(8146924-8147121)
chr3 (237-381)||(23432511-23432655)
chr3 (193-372)||(10188621-10188797)
chr3 (193-281)||(10081696-10081784)
chr3 (417-461)||(40275547-40275591)
chr3 (417-461)||(16689407-16689451)
chr3 (417-461)||(40275142-40275186)
chr3 (417-461)||(43678737-43678781)
chr3 (417-457)||(47431749-47431789)
chr3 (417-461)||(52375784-52375828)
chr3 (171-226)||(2906991-2907047)
chr3 (417-457)||(2044324-2044364)
chr3 (417-461)||(14654248-14654292)
chr3 (417-461)||(32730438-32730482)
chr3 (417-461)||(34105103-34105147)
chr3 (193-273)||(35510964-35511044)
chr3 (417-457)||(40838705-40838745)
chr3 (417-457)||(40839105-40839145)
chr3 (417-461)||(51828006-51828050)
chr3 (417-457)||(51828592-51828632)
chr3 (417-457)||(52236869-52236909)
chr3 (417-461)||(52237270-52237314)
chr3 (417-461)||(55389654-55389698)
[»] chr7 (18 HSPs)
chr7 (193-402)||(10259505-10259712)
chr7 (417-461)||(39388721-39388765)
chr7 (417-458)||(2758151-2758192)
chr7 (418-463)||(5334273-5334318)
chr7 (417-461)||(7732537-7732581)
chr7 (417-461)||(25637246-25637290)
chr7 (417-457)||(26026370-26026410)
chr7 (417-461)||(26048399-26048443)
chr7 (417-461)||(35161255-35161299)
chr7 (420-461)||(787242-787283)
chr7 (200-281)||(6628580-6628661)
chr7 (200-252)||(5299863-5299915)
chr7 (417-457)||(5333933-5333973)
chr7 (417-457)||(9181865-9181905)
chr7 (316-368)||(9739117-9739169)
chr7 (417-461)||(14311740-14311784)
chr7 (200-284)||(21382916-21383000)
chr7 (417-457)||(28687952-28687992)
[»] chr8 (17 HSPs)
chr8 (172-287)||(28847802-28847919)
chr8 (197-349)||(16207789-16207941)
chr8 (207-290)||(1444829-1444912)
chr8 (417-461)||(34799536-34799580)
chr8 (417-461)||(6115564-6115608)
chr8 (417-461)||(9796775-9796819)
chr8 (417-461)||(15255902-15255946)
chr8 (418-458)||(42035824-42035864)
chr8 (418-461)||(28254880-28254923)
chr8 (200-287)||(38801625-38801712)
chr8 (418-458)||(7911070-7911110)
chr8 (417-461)||(16578157-16578201)
chr8 (417-457)||(18050044-18050084)
chr8 (237-281)||(19706282-19706326)
chr8 (418-458)||(35693920-35693960)
chr8 (417-457)||(41260714-41260754)
chr8 (417-457)||(42036225-42036265)
[»] scaffold0533 (1 HSPs)
scaffold0533 (193-281)||(2454-2542)
[»] scaffold0072 (1 HSPs)
scaffold0072 (193-279)||(19246-19331)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 15117749 - 15117361
Alignment:
Q  16 gttagatgtatatatcttatcacttatgtgttgttcaagatgctcatttttaagcattgggagacctcttactcacacctaagactacagtcaaattaac 115  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  15117749 gttagatgtatatatcttatcatttatgtgttgttaaagatgctcattttcaagcattgggagacctcttactcacacctaagactatagtaaaattaac 15117650  T
Q  116 aagtagctggtctctaaaatgtggtagcttaaaatatgatattttttatttcaaaaagtgttgggtttatagacacgt--tggctacattttattaaaac 213  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||  |||||||||||| |||||||    
T  15117649 aagtacctagtctctaaaatgtggtagcttaaaatatgatattttttattttaaaaagtgtttggtttatagacatgtgttggctacattttgttaaaac 15117550  T
Q  214 aatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttacttaggtatttattttaaacatgaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15117549 aatagttctagcaagatgtcagacaagatgtcttaacatattggtatgacatcatagtgtgccttgttccgattacttaggtatttattttaaacatgaa 15117450  T
Q  314 aatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaagcagagataaagcggtttatac 402  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||| |||||||||||    
T  15117449 aatttcctgaatattctctgaatatttaattcacgtaaagcgttgaccaagaagcatgtttctagaagcaggtttaaggcggtttatac 15117361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 193 - 387
Target Start/End: Original strand, 17099005 - 17099199
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactta 292  Q
    |||||| |||||| |||||||  ||||| ||  |||| ||||||||  |||||||||||| || |||  |||||||||||| |||||||||||||||||     
T  17099005 ttggctgcattttgttaaaactttagttataataagacgtcagacataatgtcttaacatgttggtacgacatcatagtgtaccttgttccgcttacttg 17099104  T
Q  293 ggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaag-aagcatgtttctagaagcagaga 387  Q
    || ||||||||||||| |||| |||| |   ||||| ||| || ||||  |||| ||||||||||||||||| ||   ||||||||||||||||||    
T  17099105 gggatttattttaaacttgaagattttc-atatattatctaaagatttgtttcaagtaaagagttgaccaagaaaatgtgtttctagaagcagaga 17099199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 368
Target Start/End: Complemental strand, 14053384 - 14053210
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactt 291  Q
    ||||||| |||||| || |||||| | |||||||||||| || || |||||||||| |||| || |||  ||||||||| ||| |||||||||||| |||    
T  14053384 gttggctgcattttgtttaaacaaaaattctagcaagatatcggataagatgtcttgacatgttggtacgacatcatagcgtgtcttgttccgctttctt 14053285  T
Q  292 aggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagc 368  Q
    ||   ||  |||||| |||||||  |||||  | ||||| |||| ||||  ||||||  ||||||||||||||||||    
T  14053284 agagtttgtttttaagcatgaaa--ttcctatagattctatgaagatttgtttcacgcgaagagttgaccaagaagc 14053210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 24880752 - 24880699
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtc 245  Q
    ||||||| |||||| ||||||||  ||||||||||| |||||||||||||||||    
T  24880752 gttggctgcattttgttaaaacatgagttctagcaatatgtcagacaagatgtc 24880699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Original strand, 15115546 - 15115589
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||    
T  15115546 atatagtttaaggacgattttgttcgatttaaaagaggtaggac 15115589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 4967224 - 4967264
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  4967224 catatagtttagggacgattttgttcgatttaaaagaggta 4967264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 18150177 - 18150221
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||  ||||||||||||||||||||||||||||    
T  18150177 catatagtttagggatgattttgttcgatttaaaagaggtaggac 18150221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 21371149 - 21371193
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||    
T  21371149 catatagtttagggacgattttgtttgatttaaaagaggtaggac 21371193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 32697679 - 32697723
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  32697679 catatagtttagggacgattctgttcgatttaaaagaggtaggac 32697723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 192 - 402
Target Start/End: Original strand, 20107 - 20316
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactt 291  Q
    |||||||||||| |  |||||||||||||| |||||||||||||||||||||||||||||| || |||| |||||| || ||||||||||||||||||||    
T  20107 gttggctacattatgctaaaacaatagttccagcaagatgtcagacaagatgtcttaacatgttggtatgacatcacagcgtgccttgttccgcttactt 20206  T
Q  292 aggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaagcagagataaa 391  Q
     | |||||||||||||| |||| |||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||| |||||| |     
T  20207 ggatatttattttaaacgtgaagatttcctgaatattctctaaagatttcattcacataaagagttgaccaagaagcatgtttctagaagaagagat-ag 20305  T
Q  392 gcggtttatac 402  Q
    |||||||||||    
T  20306 gcggtttatac 20316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 192 - 380
Target Start/End: Original strand, 17870889 - 17871077
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactt 291  Q
    |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| || |||  ||||||||| ||| ||||||||||||||||    
T  17870889 gttggctacattttgttaaaacaataattctaggaagatgtcagacaagatgtcttaacatgttggtacgacatcatagcgtgtcttgttccgcttactt 17870988  T
Q  292 aggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaa 380  Q
     |  ||||||||||||| |||| ||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  17870989 ggagatttattttaaacgtgaagatttccttaatattctccgaagatttaattcacgtaaagagatgaccaagaagcgtgtttctagaa 17871077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 192 - 408
Target Start/End: Complemental strand, 13959752 - 13959539
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactt 291  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| || || |||  | ||||||| |||||||||||||||| |||    
T  13959752 gttgactacattttgttaaaacaatagctctagcaagatgtcagacaagatgtcttaatatgttggtacga-atcatagcgtgccttgttccgctttctt 13959654  T
Q  292 aggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaagcagagataaa 391  Q
     |  ||  |  | |||| |||| | ||||||||||||||||||| ||||| ||| ||| |||||||||||||||||| |||||||| ||||| | || |     
T  13959653 ggagatcaaaataaaacgtgaaga-ttcctgaatattctctgaagatttacttcgcgtgaagagttgaccaagaagcgtgtttctataagcaaatat-ag 13959556  T
Q  392 gcggtttatacataact 408  Q
    ||||||||||| |||||    
T  13959555 gcggtttatacttaact 13959539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 26974698 - 26974742
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  26974698 catatagtttagggacaattttgttcgatttaaaagaggtaggac 26974742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 34789836 - 34789880
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  34789836 catatagtttagggacaattttgttcgatttaaaagaggtaggac 34789880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 55677411 - 55677455
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  55677411 catatagtttagagacgattttgttcgatttaaaagaggtaggac 55677455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 367
Target Start/End: Complemental strand, 19568027 - 19567892
Alignment:
Q  229 atgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttacttaggtatttattttaaacatgaaaatttcctgaatatt 328  Q
    ||||| ||||||||||||| |||  || |||  |||||||||||| ||||||||| ||| ||| |  |||  |||||||||||| |  | |||||| |||    
T  19568027 atgtcggacaagatgtcttgacaggttggtaggacatcatagtgtaccttgttcccctttcttggagattgtttttaaacatgaga--tccctgaagatt 19567930  T
Q  329 ctctgaatatttaattcacgtaaagagttgaccaagaag 367  Q
    ||||||| |||||||| ||||| ||||||| ||||||||    
T  19567929 ctctgaagatttaatttacgtagagagttg-ccaagaag 19567892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 33689922 - 33689878
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  33689922 catatagtttaaggacgattttgttcgatttaaaagaggtaggac 33689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 45838640 - 45838596
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  45838640 catatagtttagggacgattttgttcgatttaaaagaggtaggac 45838596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 46737108 - 46737152
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  46737108 catatagtttagggacgattttgttcgatttaaaagaggtaggac 46737152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 11864504 - 11864599
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgctt 287  Q
    ||||||| |||||| |||||||||  |||||||||||||||| ||||| || |||| | || || |||  ||||||||||||  ||||||| ||||    
T  11864504 gttggctgcattttgttaaaacaagtgttctagcaagatgtcggacaaaatatcttgatatgttggtacgacatcatagtgtaacttgttctgctt 11864599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 12593477 - 12593516
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  12593477 atatagtttacagacgattttgttcgatttaaaagaggta 12593516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 24851919 - 24851962
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtagga 460  Q
    |||||||||||  ||| |||||||||||||||||||||||||||    
T  24851919 catatagtttagggacgattttgttcgatttaaaagaggtagga 24851962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 28465174 - 28465131
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtagga 460  Q
    |||||||||||  ||| |||||||||||||||||||||||||||    
T  28465174 catatagtttaaggacgattttgttcgatttaaaagaggtagga 28465131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 54440661 - 54440620
Alignment:
Q  420 atagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||  ||| ||||||||||||||||||||||||||||    
T  54440661 atagtttagggacgattttgttcgatttaaaagaggtaggac 54440620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 11426522 - 11426602
Alignment:
Q  201 attttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgtt 281  Q
    |||||||||||| ||  |||||||||||||||  ||||||||||||  |||| || |||  ||||| |||| |||||||||    
T  11426522 attttattaaaataagtgttctagcaagatgttggacaagatgtctcgacatgttggtacgacatcgtagtctgccttgtt 11426602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 19528962 - 19528918
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||| ||||||||||||||||||||||    
T  19528962 catatagtttagggacgattttattcgatttaaaagaggtaggac 19528918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 35193401 - 35193357
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| |||||||||||||| |||||||||||||    
T  35193401 catatagtttagggacgattttgttcgatttgaaagaggtaggac 35193357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 174 - 383
Target Start/End: Complemental strand, 51111110 - 51110903
Alignment:
Q  174 tgttgggtttatagacacgt--tggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagt 271  Q
    |||||||||| |||||| ||  ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |||  |||||||||     
T  51111110 tgttgggtttgtagacatgtgttggttacattttgttaaaacaatagttctagcaagatgtcagacaagatgtcttaacctgttggtacgacatcatagc 51111011  T
Q  272 gtgccttgttccgcttacttaggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatg 371  Q
    |||||||||||||||| ||| | ||||||||||     |||| ||||||| ||||||||||||| ||| ||||||||||||| |||||| ||||||| ||    
T  51111010 gtgccttgttccgctttcttggttatttatttt----gtgaagatttcctaaatattctctgaagattaaattcacgtaaagcgttgactaagaagcgtg 51110915  T
Q  372 tttctagaagca 383  Q
    ||||||||||||    
T  51110914 tttctagaagca 51110903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 174 - 408
Target Start/End: Complemental strand, 24550040 - 24549806
Alignment:
Q  174 tgttgggtttatagacacg--ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagt 271  Q
    |||||||||| |||||| |  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||     
T  24550040 tgttgggtttgtagacatgcattggctacattttgttaaaacaatagttctagcaagatgtcagacaagatgtcttaacattttggtacgacatcatagc 24549941  T
Q  272 gtgccttg-ttccgcttacttaggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcat 370  Q
    |||||||| |||||| | ||| | |||||||||||| | |||| |||| || ||||||||||||| |||| | |||||  |||||||||||||||| |||    
T  24549940 gtgccttgattccgccttcttggttatttattttaagcgtgaagattttctaaatattctctgaagattttagtcacg--aagagttgaccaagaatcat 24549843  T
Q  371 gtttctagaagcagagataaagcggtttatacataact 408  Q
    |||| |||||| ||||| ||  |||||||||| |||||    
T  24549842 gtttttagaagtagaga-aagacggtttatacttaact 24549806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 25124249 - 25124161
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgtt 281  Q
    |||||| |||||| |||||||||  |||||| ||||||||  ||||||||||||| ||||||| |||  ||||| ||||||||||||||    
T  25124249 ttggctgcattttgttaaaacaaatgttctaacaagatgttggacaagatgtcttgacatattggtacgacatcgtagtgtgccttgtt 25124161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 18838017 - 18838086
Alignment:
Q  317 ttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaagcagag 386  Q
    ||||||||||||||||||| ||||| ||| ||| |||| || |||||||||| |||||||  ||||||||    
T  18838017 ttcctgaatattctctgaagatttatttcgcgtgaagaattaaccaagaagcgtgtttctttaagcagag 18838086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 30786865 - 30786821
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  30786865 catatagtttagggacgattttgttcgatttaaaagaggtaggac 30786821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 44582150 - 44582106
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||| |||| |||| ||||||||||||||||||||||||||||    
T  44582150 catataatttagagacgattttgttcgatttaaaagaggtaggac 44582106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 50304532 - 50304492
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  50304532 catatagtttagagacgattttgttcgatttaaaagaggta 50304492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 10278641 - 10278598
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtagga 460  Q
    |||||||||||  ||| |||||||||||||||||||||||||||    
T  10278641 catatagtttagggacgattttgttcgatttaaaagaggtagga 10278598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Original strand, 52335964 - 52336007
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||    
T  52335964 atatagtttagggacgattttgttcgatttaaaagaggtaggac 52336007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 454
Target Start/End: Complemental strand, 1837598 - 1837561
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagag 454  Q
    |||||||||||  |||||||||||||||||||||||||    
T  1837598 catatagtttagggacaattttgttcgatttaaaagag 1837561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 454
Target Start/End: Complemental strand, 2868004 - 2867967
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagag 454  Q
    |||||||||||  |||||||||||||||||||||||||    
T  2868004 catatagtttaacgacaattttgttcgatttaaaagag 2867967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 14911076 - 14911117
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtc 233  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  14911076 gttggctgcattttgttaaaacaagagttctagcaagatgtc 14911117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 34555472 - 34555431
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtag 458  Q
    |||||||||||  ||| |||||||||||||||||||||||||    
T  34555472 catatagtttagggacgattttgttcgatttaaaagaggtag 34555431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 45048248 - 45048207
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtag 458  Q
    |||||||||||| ||| ||||||||| |||||||||||||||    
T  45048248 catatagtttatggacgattttgttcaatttaaaagaggtag 45048207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 2868161 - 2868205
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||| ||  ||| ||||||||||||||||||||||||||||    
T  2868161 catatagtgtagggacgattttgttcgatttaaaagaggtaggac 2868205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 8230094 - 8230134
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  8230094 catatagtttagggacgattttgttcgatttaaaagaggta 8230134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 16298775 - 16298735
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  16298775 catatagtttagggacgattttgttcgatttaaaagaggta 16298735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 461
Target Start/End: Complemental strand, 29439019 - 29438979
Alignment:
Q  421 tagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  29439019 tagtttagggacgattttgttcgatttaaaagaggtaggac 29438979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 37421253 - 37421213
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  37421253 catatagtttagggacgattttgttcgatttaaaagaggta 37421213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 39485158 - 39485114
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| |||||||||||||| |||||||||||||    
T  39485158 catatagtttagggacgattttgttcgatttgaaagaggtaggac 39485114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 171 - 402
Target Start/End: Complemental strand, 32669457 - 32669225
Alignment:
Q  171 aagtgttgggtttatagacacgt--tggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcat 268  Q
    ||||||| |||||||||||| ||  |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| || ||   |||||||    
T  32669457 aagtgttaggtttatagacatgtgttggctatattttgttaaaacaatagttctagcaaggtgtcagacaagatatcttaacatgttggtgcgacatcat 32669358  T
Q  269 agtgtgccttgttccgcttacttaggtatttattttaaacatg-aaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaag 367  Q
    || |||||||| ||||||| ||| ||   ||| |  ||| |||  ||  ||||||||||||||||||| ||||  ||||||| ||||||||| |||||||    
T  32669357 agcgtgccttgatccgctttctt-ggagattaatccaaaaatgtgaagattcctgaatattctctgaagatttgtttcacgtgaagagttgaacaagaag 32669259  T
Q  368 catgtttctagaagcagagataaagcggtttatac 402  Q
    | ||||||||||||||||||| | |||||||||||    
T  32669258 cgtgtttctagaagcagagat-atgcggtttatac 32669225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 192 - 369
Target Start/End: Complemental strand, 12464872 - 12464700
Alignment:
Q  192 gttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactt 291  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| || ||   ||||||||| |||||||||||||||| |||    
T  12464872 gttggctacattttgttaaa-caatagttctagcaagatgtcagacaagatgttttaacatgttggt---acatcatagcgtgccttgttccgctttctt 12464777  T
Q  292 aggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagca 369  Q
     |  ||  || | |||||| |||  ||||| ||||||||||||| ||||  ||| ||| |||||||||||||||||||    
T  12464776 ggagatcaatctaaaacat-aaagattcctaaatattctctgaagatttgtttcccgtgaagagttgaccaagaagca 12464700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 31073595 - 31073635
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  31073595 catatagtttagggacaattttgttcgatttaaaagaggta 31073635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 5120922 - 5120965
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtagga 460  Q
    |||||||||||  ||| |||||||||||||||||||||||||||    
T  5120922 catatagtttagggacgattttgttcgatttaaaagaggtagga 5120965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 464
Target Start/End: Original strand, 31574178 - 31574225
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggactaa 464  Q
    |||||||||||  ||| |||||||||||||||||||||||| ||||||    
T  31574178 catatagtttagggacgattttgttcgatttaaaagaggtatgactaa 31574225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 26947435 - 26947499
Alignment:
Q  201 attttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacat 265  Q
    ||||| |||||||||  |||||| ||||||||  ||||||||||||| ||||||| |||| ||||    
T  26947435 attttgttaaaacaactgttctaccaagatgttggacaagatgtcttgacatattggtatgacat 26947499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 197 - 383
Target Start/End: Original strand, 20376338 - 20376524
Alignment:
Q  197 ctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaa-catattagtataacatcatagtgtgccttg-ttccgcttacttagg 294  Q
    ||||||||| |||||||||| ||||||| ||||||| |||||||||||||||| ||| || |||  |||||||||  ||||||  |||||| | |||       
T  20376338 ctacattttgttaaaacaattgttctagtaagatgttagacaagatgtcttaaacatgttggtacgacatcatagcatgccttaattccgccttcttgat 20376437  T
Q  295 tatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaagca 383  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||  |||||||| |||||||||| |||||| |||||||    
T  20376438 tatttattttaaacgtgaagatttcctgaatattctctgaagatttaattcac--aaagagtttaccaagaagcgtgtttcgagaagca 20376524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 30948109 - 30947916
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactta 292  Q
    |||||| |||||| |||||||| |||| |||||||||||||||||| |||||||||||||    |||  |||||||||| |||||| ||||||||||||     
T  30948109 ttggcttcattttgttaaaacattagtcctagcaagatgtcagacatgatgtcttaacatg---gtacgacatcatagtatgccttattccgcttacttg 30948013  T
Q  293 ggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaag-aagcatgtttctagaagcagagata 389  Q
    |  ||| ||||||||| |||| ||||||   ||||||| |||| ||||  ||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  30948012 gagattcattttaaacgtgaagatttcc-atatattctttgaagatttgtttcacgtgaagagttgaccaagaaagcgtgtttctagaagcagagata 30947916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 174 - 346
Target Start/End: Complemental strand, 17364479 - 17364305
Alignment:
Q  174 tgttgggtttatagacacgt--tggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtctt-aacatattagtataacatcatag 270  Q
    |||||||||| |||||| ||  |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||| || |||  |||||||||    
T  17364479 tgttgggtttttagacatgtgttggctacatttttttaaaacaatagttctaggaagatgttagacaagatgtcttaaacatgttggtactacatcatag 17364380  T
Q  271 tgtgccttgttccgcttacttaggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattca 346  Q
     |||||||| ||||||||||| |  |||  |||||||| |||| | |||||||||||||||| || |||| |||||    
T  17364379 cgtgccttgatccgcttacttggagattctttttaaacgtgaaga-ttcctgaatattctctaaagatttgattca 17364305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 11540091 - 11540135
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  11540091 catatagtttatggacgattttgttcgatttaaaagaggtaggac 11540135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 4808972 - 4808929
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtagga 460  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  4808972 catatagtttatggacgattttgttcgatttaaaagaggtagga 4808929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 21690862 - 21690943
Alignment:
Q  200 cattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgtt 281  Q
    |||||| |||||||||  |||||||||||||||  ||| ||||||||| |||| || ||| |||||||||| ||| ||||||    
T  21690862 cattttgttaaaacaagtgttctagcaagatgttggactagatgtcttgacatgttggtacaacatcatagcgtgtcttgtt 21690943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 649620 - 649576
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  649620 catatagtttagggacgattttgttcgatttaaaagaggtaggac 649576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 15550766 - 15550722
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  15550766 catatagtttagggacgattttgttcgatttaaaagaggtaggac 15550722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 38008043 - 38007999
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  38008043 catatagtttagggacgattttgttcgatttaaaagaggtaggac 38007999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 42192333 - 42192289
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  42192333 catatagtttagggacgattttgttcgatttaaaagaggtaggac 42192289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Original strand, 43216163 - 43216206
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||    
T  43216163 atatagtttagggacgattttgttcgatttaaaagaggtaggac 43216206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 4355848 - 4355808
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  4355848 catatagtttagggacgattttgttcgatttaaaagaggta 4355808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 16175803 - 16175843
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  16175803 catatagtttaaggacgattttgttcgatttaaaagaggta 16175843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 16953387 - 16953431
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||| ||||  |||| |||||||||||||||||||||||||||    
T  16953387 catatactttagggacatttttgttcgatttaaaagaggtaggac 16953431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 20128190 - 20128234
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||    
T  20128190 catatagtttaaggacgattttgtttgatttaaaagaggtaggac 20128234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 32418600 - 32418640
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtag 458  Q
    ||||||||||  ||| |||||||||||||||||||||||||    
T  32418600 atatagtttaaggacgattttgttcgatttaaaagaggtag 32418640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 33920705 - 33920665
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  33920705 catatagtttagggacgattttgttcgatttaaaagaggta 33920665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 40584705 - 40584757
Alignment:
Q  200 cattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacat 252  Q
    |||||| |||||||||  |||||||||||||||  ||||||||||||| ||||    
T  40584705 catttttttaaaacaaatgttctagcaagatgttggacaagatgtcttgacat 40584757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 42192700 - 42192740
Alignment:
Q  421 tagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  42192700 tagtttagggacgattttgttcgatttaaaagaggtaggac 42192740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 193 - 389
Target Start/End: Original strand, 8146924 - 8147121
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtca--gacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttact 290  Q
    |||| |||||||| |||||||| |||||||||||||||||||  |||| |||||||| |||| || |||  | ||||||| ||| |||||||||||||||    
T  8146924 ttgggtacattttgttaaaacattagttctagcaagatgtcacagacacgatgtcttgacatgttggtacgatatcatagcgtgtcttgttccgcttact 8147023  T
Q  291 taggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaagcagagata 389  Q
    |    ||| ||||||||| |||| |||||| | |||||||||||| ||||  ||||||| |||||||||||||||| | |||||||||||| |||||||    
T  8147024 tgaagattcattttaaacgtgaagatttcc-gtatattctctgaagatttgtttcacgtgaagagttgaccaagaaacgtgtttctagaagtagagata 8147121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 23432511 - 23432655
Alignment:
Q  237 caagatgtcttaa-catattagtataacatcatagtgtgccttg-ttccgcttacttaggtatttattttaaacatgaaaatttcctgaatattctctga 334  Q
    ||||||||||||| ||| || |||  ||||||||| |||||||| |||||| | ||| | |||||||||||||  |||| ||||||||||||||||||||    
T  23432511 caagatgtcttaaacatgttggtacgacatcatagcgtgccttgattccgccttcttggttatttattttaaatgtgaagatttcctgaatattctctga 23432610  T
Q  335 atatttaattcacgtaaagagttgaccaagaagcatgtttctagaag 381  Q
    | | ||||||||||  |||||||||||||||||| ||||||||||||    
T  23432611 agagttaattcacg--aagagttgaccaagaagcgtgtttctagaag 23432655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 372
Target Start/End: Original strand, 10188621 - 10188797
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactta 292  Q
    |||||| |||||| ||||||||| ||||||| ||||||||| ||||||||||||| |||| || ||   ||||||||| ||| ||||||  |||| |||     
T  10188621 ttggctgcattttgttaaaacaagagttctaacaagatgtcggacaagatgtcttgacatgttggtgcgacatcatagcgtgtcttgttttgctttcttg 10188720  T
Q  293 g-gtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgt 372  Q
    | |  | |||||||||| ||| |  ||| |||| |||||||||| |||| ||||| ||   ||||||||||||||||||||    
T  10188721 gagactgtattttaaacgtgaga--ttcatgaagattctctgaagatttgattcatgt--ggagttgaccaagaagcatgt 10188797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 10081696 - 10081784
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgtt 281  Q
    |||||| |||||| ||||||||| ||||||| ||||||||| ||||||||||||| |||| || ||   ||||||||| ||| ||||||    
T  10081696 ttggctgcattttgttaaaacaagagttctaacaagatgtcggacaagatgtcttgacatgttggtgcgacatcatagcgtgtcttgtt 10081784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 40275547 - 40275591
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  40275547 catatagtttagagacgattttgttcgatttaaaagaggtaggac 40275591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 16689451 - 16689407
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||    
T  16689451 catatattttatggacgattttgttcgatttaaaagaggtaggac 16689407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 40275186 - 40275142
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||    
T  40275186 catagagtttagggacaattttgttcgatttaaaagaggtaggac 40275142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 43678737 - 43678781
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||    
T  43678737 catatagtttatggacgattttgttcgatttaaaagaggttggac 43678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 47431789 - 47431749
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  47431789 catatagtttaaagacgattttgttcgatttaaaagaggta 47431749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 52375784 - 52375828
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||    
T  52375784 catatagtttatggacgattttgttcaatttaaaagaggtaggac 52375828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 2906991 - 2907047
Alignment:
Q  171 aagtgttgggtttatagacacgt--tggctacattttattaaaacaatagttctagca 226  Q
    |||||||||||||||||||| ||  |||||||||||| ||||||||||| ||||||||    
T  2906991 aagtgttgggtttatagacatgtgttggctacattttgttaaaacaata-ttctagca 2907047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 2044364 - 2044324
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||| ||||| ||| ||||||||||||||||||||||||    
T  2044364 catataatttatggacgattttgttcgatttaaaagaggta 2044324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 14654292 - 14654248
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||| |||| |||||||||||||||||| || ||||||    
T  14654292 catatagtttaaagacgattttgttcgatttaaaaaagataggac 14654248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 32730482 - 32730438
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||| ||||||||||||||||||    
T  32730482 catatagtttagggacgattttgttcaatttaaaagaggtaggac 32730438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 34105103 - 34105147
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  34105103 catatagtttagggacgattttgttcgatttaaaagagggaggac 34105147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 35511044 - 35510964
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgt 273  Q
    |||||| |||||| |||||||||  ||| |||||||||||  ||||||||||||| |||| || |||  ||||| ||||||    
T  35511044 ttggctgcattttgttaaaacaagtgttttagcaagatgttggacaagatgtcttgacatgttggtacgacatcgtagtgt 35510964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 40838745 - 40838705
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  40838745 catatagtttatggacgattttgtttgatttaaaagaggta 40838705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 40839105 - 40839145
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  40839105 catatagtttagggacgattttgttcgatttaaaagaggta 40839145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 51828050 - 51828006
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||| ||||||    
T  51828050 catatagtttagggacgattttgttcgatttaaaagagctaggac 51828006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 51828632 - 51828592
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  51828632 catatagtttacggacgattttgttcgatttaaaagaggta 51828592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 52236909 - 52236869
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  52236909 catatagtttagggacgattttgttcgatttaaaagaggta 52236869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 52237270 - 52237314
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||||    
T  52237270 catataatttagggacgattttgttcgatttaaaagaggtaggac 52237314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 55389698 - 55389654
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| |||||||||||||||||| |||||||||    
T  55389698 catatagtttaaggacgattttgttcgatttaaaaaaggtaggac 55389654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 193 - 402
Target Start/End: Original strand, 10259505 - 10259712
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttactta 292  Q
    |||||| || ||| |||||| | |||||||| |||||||||||| |  |||||||||||| || |||  ||||||||| || |||||||||||||||||     
T  10259505 ttggctgcaatttgttaaaatattagttctaccaagatgtcagatataatgtcttaacatgttggtacgacatcatagcgtaccttgttccgcttacttg 10259604  T
Q  293 ggtatttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagcatgtttctagaagcagagataaag 392  Q
    |  ||| || ||||| ||||| ||||||   |||||||||||  ||||  ||||||| |||||||||||  ||||  |||||||| ||||||||||| |     
T  10259605 gagattcatattaaaaatgaagatttcc-atatattctctgacaatttgtttcacgtgaagagttgaccgggaagtgtgtttctaaaagcagagataga- 10259702  T
Q  393 cggtttatac 402  Q
    ||||||||||    
T  10259703 cggtttatac 10259712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 39388721 - 39388765
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  39388721 catatagtttagagacgattttgttcgatttaaaagaggtaggac 39388765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 2758151 - 2758192
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtag 458  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  2758151 catatagtttatggacgattttgttcgatttaaaagaggtag 2758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 5334273 - 5334318
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtaggacta 463  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||    
T  5334273 atatagtttagggacgattttgttcgatttaaaagaggtaggacta 5334318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 7732581 - 7732537
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  7732581 catatagtttaaggacgattttgttcgatttaaaagaggtaggac 7732537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 25637290 - 25637246
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  25637290 catatagtttagggacgattttgttcgatttaaaagaggtaggac 25637246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 26026410 - 26026370
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  26026410 catatagtttatggacgattttgttcgatttaaaagaggta 26026370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 26048399 - 26048443
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  |||||||||||| |||||||||||||||||||    
T  26048399 catatagtttaaggacaattttgtttgatttaaaagaggtaggac 26048443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 35161255 - 35161299
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  35161255 catatagtttagggacgattttgttcgatttaaaagaggtaggac 35161299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 787242 - 787283
Alignment:
Q  420 atagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||  ||| ||||||||||||||||||||||||||||    
T  787242 atagtttagggacgattttgttcgatttaaaagaggtaggac 787283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 6628580 - 6628661
Alignment:
Q  200 cattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgtt 281  Q
    |||||| |||||| ||  |||||||||||||||  |||||||||||||||||| || |||  ||||| |||  |||||||||    
T  6628580 cattttgttaaaataagtgttctagcaagatgttggacaagatgtcttaacatgttggtacgacatcgtagcatgccttgtt 6628661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 5299915 - 5299863
Alignment:
Q  200 cattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacat 252  Q
    |||||| |||||||||  |||||||||||||||  ||||||||||||| ||||    
T  5299915 cattttcttaaaacaagtgttctagcaagatgttggacaagatgtcttgacat 5299863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 5333973 - 5333933
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  5333973 catatagtttagggacgattttgttcgatttaaaagaggta 5333933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 9181865 - 9181905
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  9181865 catatagtttagggacgattttgttcgatttaaaagaggta 9181905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 9739117 - 9739169
Alignment:
Q  316 tttcctgaatattctctgaatatttaattcacgtaaagagttgaccaagaagc 368  Q
    ||||||||| |||||||||| ||||  ||||||  ||||||||||||||||||    
T  9739117 tttcctgaagattctctgaagatttgtttcacgcgaagagttgaccaagaagc 9739169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 14311740 - 14311784
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||| |||| |||||||||||||||||| || ||||||    
T  14311740 catatagtttaaagacgattttgttcgatttaaaaaagataggac 14311784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 21382916 - 21383000
Alignment:
Q  200 cattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccg 284  Q
    |||||| |||||||||  ||||||| || || |||| ||| || |||| |||| || |||  |||||||||||||||||||||||    
T  21382916 cattttgttaaaacaaatgttctagtaatatatcaggcaatatatcttgacatgttggtacgacatcatagtgtgccttgttccg 21383000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 28687952 - 28687992
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  28687952 catatagtttagggacgattttgttcgatttaaaagaggta 28687992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 28847802 - 28847919
Alignment:
Q  172 agtgttgggtttatagacacgt--tggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcata 269  Q
    |||||| |||||||||||| ||  ||||| |||||| ||||||||| ||||||||||||||||| ||||||  ||||| |||| || ||| |||||||||    
T  28847802 agtgttaggtttatagacatgtattggctgcattttcttaaaacaagagttctagcaagatgtcggacaagtggtcttgacatgttggtacaacatcata 28847901  T
Q  270 gtgtgccttgttccgctt 287  Q
    | ||||||| ||| ||||    
T  28847902 gcgtgccttattctgctt 28847919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 349
Target Start/End: Original strand, 16207789 - 16207941
Alignment:
Q  197 ctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttg-ttccgcttacttaggt 295  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| || ||  || ||||||| ||||| || ||| ||| |||  |      
T  16207789 ctacattttgttaaaacaatagttctagaaagatttcagacaagatgtcttaacatgttggtgcaatatcatagcgtgccatgattctgctaactaggag 16207888  T
Q  296 atttattttaaacatgaaaatttcctgaatattctctgaatatttaattcacgt 349  Q
    ||||||||||||| |||| | || ||||||||||||| |  |||| ||||||||    
T  16207889 atttattttaaacgtgaaga-ttactgaatattctctaatgatttgattcacgt 16207941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 1444912 - 1444829
Alignment:
Q  207 ttaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgcttact 290  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||  || |||  ||||||||  ||| |||||||||||||||    
T  1444912 ttaaaacattagttctagcaagatgtcagacacgatgtcttaacacgttggtacgacatcataacgtgtcttgttccgcttact 1444829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 34799536 - 34799580
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  34799536 catatagtttagggacaattttgttcgatttaaaagaggtaggac 34799580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 6115564 - 6115608
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  6115564 catatagtttagggacgattttgttcgatttaaaagaggtaggac 6115608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 9796819 - 9796775
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||    
T  9796819 catatagtttatggatgattttgttcgatttaaaagaggtaggac 9796775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 15255946 - 15255902
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||    
T  15255946 catatagtttagggacgattttgttcgatttaaaagaggtaggac 15255902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 42035864 - 42035824
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtag 458  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  42035864 atatagtttatggacgattttgttcgatttaaaagaggtag 42035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Original strand, 28254880 - 28254923
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||    
T  28254880 atatagtttagggacgattttgttcgatttaaaagaggtaggac 28254923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 38801625 - 38801712
Alignment:
Q  200 cattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgttccgctt 287  Q
    |||||| |||||||||  |||||||||| ||||  | ||||||||||| |||| || ||| |||||| ||| |||||||||| |||||    
T  38801625 cattttgttaaaacaagtgttctagcaaaatgtttgtcaagatgtcttgacatgttggtacaacatcgtagcgtgccttgtttcgctt 38801712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 7911070 - 7911110
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtag 458  Q
    ||||||||||  ||| |||||||||||||||||||||||||    
T  7911070 atatagtttagggacgattttgttcgatttaaaagaggtag 7911110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 16578201 - 16578157
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggtaggac 461  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||||    
T  16578201 catataatttagggacgattttgttcgatttaaaagaggtaggac 16578157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 18050044 - 18050084
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  18050044 catatagtttagggacgattttgttcgatttaaaagaggta 18050084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 19706282 - 19706326
Alignment:
Q  237 caagatgtcttaacatattagtataacatcatagtgtgccttgtt 281  Q
    ||||||||||| ||||||| ||| ||||||||||||| |||||||    
T  19706282 caagatgtcttgacatattggtacaacatcatagtgtaccttgtt 19706326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 35693960 - 35693920
Alignment:
Q  418 atatagtttatagacaattttgttcgatttaaaagaggtag 458  Q
    ||||||||||| ||| ||||| |||||||||||||||||||    
T  35693960 atatagtttatggacgattttattcgatttaaaagaggtag 35693920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 41260714 - 41260754
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  41260714 catatagtttagggacgattttgttcgatttaaaagaggta 41260754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 42036225 - 42036265
Alignment:
Q  417 catatagtttatagacaattttgttcgatttaaaagaggta 457  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  42036225 catatagtttagggacgattttgttcgatttaaaagaggta 42036265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 2542 - 2454
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttgtt 281  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||| ||||| |||| |||| || |||| |||||| |  ||||||||||    
T  2542 ttggccacattttgttaaaacaagtgttctagcaagatgtcagataagatatcttgacatgttggtatgacatcacaacgtgccttgtt 2454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 19331 - 19246
Alignment:
Q  193 ttggctacattttattaaaacaatagttctagcaagatgtcagacaagatgtcttaacatattagtataacatcatagtgtgccttg 279  Q
    |||||| |||||| |||||||  ||||| |||||||||||||||||  |||||||||||| || |||  |||||| |||||| ||||    
T  19331 ttggctgcattttgttaaaact-tagttatagcaagatgtcagacataatgtcttaacatgttggtacgacatcagagtgtgtcttg 19246  T

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