View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_16 (Length: 478)
Name: NF20321_low_16
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 153 - 460
Target Start/End: Original strand, 48956944 - 48957251
Alignment:
| Q |
153 |
gctactcaccgggccacacgttaacagtagtaaactaaccctctcctttcattcattttggctacttctacattgaattcagctatctaccatatgattc |
252 |
Q |
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| T |
48956944 |
gctactcaccgtgccacacgttaacagtagtaaactaaccctctcctttcattcattttggctacttctgcattgaattcagctatctaccatatgattc |
48957043 |
T |
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| Q |
253 |
catccttgttgttggtttaacataacaaaacaatgaaaaatgagtttgcaccacttttttattttcattatacacataggttatttaattaacctaaaaa |
352 |
Q |
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| T |
48957044 |
catccttgttgttggtttaacataacaaaacaatgaaaaatgagtttgtaccacttttttattttgattatacacataggttatttaattaacctaaaaa |
48957143 |
T |
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| Q |
353 |
attatttttacttataagaatgaccatatatcaaaggtgtaatctataatgtggaaacgatatacacatacatgtataaattaggatccatctctaaagt |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48957144 |
attatttttacttataagaatgaccatatatcaaaggtgtaatctataatgtgcaaacgatatacacatacatgtataaattaggatccatctctaaagt |
48957243 |
T |
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| Q |
453 |
ctacacat |
460 |
Q |
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|||||||| |
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| T |
48957244 |
ctacacat |
48957251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 48956796 - 48956904
Alignment:
| Q |
15 |
cacagaacacgttaaaactcaaaagtaactaaccctctcatttccaaaacaacatggggactatgttgtttattgccgttgataaacatgaggtggttaa |
114 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48956796 |
cacagaacacgttaaaattcaaaagtaactaaccctctcatttccaaaacaacatggggacgatgttgtttattgccgttgataaacatgaggtggttaa |
48956895 |
T |
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| Q |
115 |
tttcatcgc |
123 |
Q |
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| T |
48956896 |
tttcatcgc |
48956904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 6156716 - 6156761
Alignment:
| Q |
333 |
ttatttaattaacctaaaaaattatttttacttataagaatgacca |
378 |
Q |
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| T |
6156716 |
ttattcaatgaacctaaaaatttatttttacttataataatgacca |
6156761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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