View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20321_low_18 (Length: 466)
Name: NF20321_low_18
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 26050328 - 26049895
Alignment:
| Q |
19 |
aatactaatatgttgataacagacatgttgatgtgcatagatttgtttgcaagatccatttcttaagatttctggtaacgcttagccaatgttagaaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26050328 |
aatactaatatgttgataacagacatgttgatgtgcatagatttgtttgcaagatccatttcttaagatttctggtaacgattagccaatgttagaaata |
26050229 |
T |
|
| Q |
119 |
gtcattgatttcttttactcccatatatattataattctaatcatagacataaaaacaggatttgataaacaaaaaataatagaaatattcaagtcaatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26050228 |
gtcattgatttcttttactcccatatatattataattctaatcatagacataaaaacaggatttgattaacaaaaaataatagaaatattcaagtcaatg |
26050129 |
T |
|
| Q |
219 |
tacaagctattgtgcagcattcaaatctaccatacatcaaaagatttgcatgagaaatatccaccaatttatcagcacgggtttgaattctccctggttg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26050128 |
tacaagctattgtgcagcattcaaatctaccatacatcaaacgatttgcatgagaaatatccatcaatttatcagcacgggtttgaattctccctggttg |
26050029 |
T |
|
| Q |
319 |
tc-gaatatagaatcagaacccaccaatgcagcaaaagtcatgtcaagtgttaaaaccagaagattcaaatccatatcaaattagcaacaccttatcaag |
417 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26050028 |
tcggaatataggatcagaacccaccaatgcagcaaaagtcatgtccagtgttaaaaccagaagattcaaatccatatcaaattagcaacaccttatcaag |
26049929 |
T |
|
| Q |
418 |
aagtgcaattgccaactcgtcgtacctgcctttg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26049928 |
aagtgcaattgccaactcgtcgtacctgcctttg |
26049895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University