View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_19 (Length: 460)
Name: NF20321_low_19
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 53274105 - 53274533
Alignment:
| Q |
11 |
ttattcttcaatgtgtaccttgatgatttgtttcttcatattattgggagttgtttcttacacaactaaggctagtttggcaacactagagcttccacca |
110 |
Q |
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| T |
53274105 |
ttattcttcaatgtgtaccttaatgatttatttcttcatattattgggagttgtttcttacacaactaaggctagtttggcaacaatagagcttccacca |
53274204 |
T |
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| Q |
111 |
aatgtttcatttccagcagtatttgtgtttggagattcaatcatggatacgggcaacaacaataataacatgaaaacatatgctaggtgcaattttcttc |
210 |
Q |
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| T |
53274205 |
aatgtttcatttccagcagtatttgtgtttggagattcaatcatggatacgggcaacaacaataataacatgaaaacatatgctaggtgcaattttcttc |
53274304 |
T |
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| Q |
211 |
catatggtaaagatttcaatggaggcatccctactggtcggttttgcaatggaaaagttccatcagactatataggtacatattatattatcttcatgag |
310 |
Q |
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| T |
53274305 |
catatggtaaagatttcaatggaggcatccctactggtcggttttgcaatggaaaagttccatcagactatataggtacatattatattatcttc---ag |
53274401 |
T |
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| Q |
311 |
atagcatatactagccatatttcttaattacgaatatattccttcgtgtataaccaggttcttttacatcttcaacacatagacatcttaaatcaaatgg |
410 |
Q |
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| T |
53274402 |
atagcatatactagccatatgtcttaattacgaatatattccttcgtgtataaccaggttcttttacatcttcaacacatagacatctt-----aaatgg |
53274496 |
T |
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| Q |
411 |
ttgcgaccgcaattgcgatcattctaaagttatgatt |
447 |
Q |
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| T |
53274497 |
ttgcgaccgcaattgcgatcattctaaaattatgatt |
53274533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 289
Target Start/End: Original strand, 8231001 - 8231188
Alignment:
| Q |
102 |
cttccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatacgggcaacaacaataataacatgaaaacatatgctaggtgca |
201 |
Q |
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|||||||||||||||||| |||||||||| || |||||||||||||| ||| ||||||| || ||||| || || || ||| |||| ||| | |||| |
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| T |
8231001 |
cttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgagaacaacagctcgttgca |
8231100 |
T |
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| Q |
202 |
attttcttccatatggtaaagatttcaatggaggcatccctactggtcggttttgcaatggaaaagttccatcagactatataggtac |
289 |
Q |
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| T |
8231101 |
attttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttccctcagacttcataggtac |
8231188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 8252582 - 8252637
Alignment:
| Q |
105 |
ccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatac |
160 |
Q |
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| T |
8252582 |
ccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatac |
8252637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 8270152 - 8270210
Alignment:
| Q |
102 |
cttccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatac |
160 |
Q |
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| T |
8270152 |
cttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatac |
8270210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 8242622 - 8242661
Alignment:
| Q |
121 |
ttccagcagtatttgtgtttggagattcaatcatggatac |
160 |
Q |
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| T |
8242622 |
ttccagcagtgtttgtgtttggagattcaatcatggatac |
8242661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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