View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_20 (Length: 458)
Name: NF20321_low_20
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 13029516 - 13029068
Alignment:
| Q |
1 |
aataattttcaaatatttgtccatgctttgcaaggatgagaacgataaaaataagtttagatttgttctatttatccataatatgagctaggtagataca |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13029516 |
aataattttcaaatatttgtccgtgctttgcaaggatgagaacgatgaaaataagtttagatttgttctatttatccataatatgagctaggtggataca |
13029417 |
T |
|
| Q |
101 |
agttgtagattagtagaactcatttaataagtggaccacatatttaagtctcactaatttttcacttgtatctatcattctcatgacattagataaaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
13029416 |
agttgtagattagtagaactcatttaataagtggaccacatatttaagtctcactaatttttcacttgcatctatctttctcatgacattagataaaggg |
13029317 |
T |
|
| Q |
201 |
tgaataaatagagcaaacacgaatttgatgacaatcttgacaattgatctccacattgtaaatgttgaagaactattattcattttgacaattaataaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13029316 |
tgaataaatagagcaaacacgaatttgatgacaatcttgacaattgatctccgcattgtaaatgttgaagaactattattcattttgacaattaataaat |
13029217 |
T |
|
| Q |
301 |
tatagatcaatgactaaaattttcacattattttcttgaag-nnnnnnnncttcaatggagagaatcttaannnnnnnggaactgatgttattctatgtg |
399 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
13029216 |
tatagatcaatgactaaaatcttcacattattttcttgaagtttttttttcttcaatggagagaatctt-atttttttggaactgatgttattctatgtg |
13029118 |
T |
|
| Q |
400 |
tgggcttgtgcctacgcaaaaattttagaaacttattttagtagaataat |
449 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
13029117 |
tgggcttgtgcctacacaaaaattttagaaacttattttagtagtataat |
13029068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 13036174 - 13035822
Alignment:
| Q |
1 |
aataattttcaaatatttgtccatgctttgcaaggatgagaacgataaaaataagtttagatttgttctatttatccataat-----------------a |
83 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
13036174 |
aataattttcaaatatttgtccgtcctttgcaaggatgagaacgatgaaaatgagtttagatttgttctatt-atccataatctatttaatgtctattta |
13036076 |
T |
|
| Q |
84 |
tgagctaggtagatacaagttgtagattagtagaactcatttaataagtggaccacatatttaagtctcactaatttttcacttgtatctatcattctca |
183 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
13036075 |
tgagctaggtcgatagaagttgtagattagtagaactcatttaataagtggaccatatatttaagtctcactaatttttcacttgtgtctatctttctca |
13035976 |
T |
|
| Q |
184 |
tgacattagataaagggtgaataaatagagcaaacacgaatttgatgacaatcttgacaattgatctccacattgtaaatgttgaagaactattattcat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||| || |
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|
| T |
13035975 |
tgacattagataaagggtgaataaatagagcaaacacgaattgaatgacaatcttgacaattgatcgctgcattgtcaatgttgaagaactattattgat |
13035876 |
T |
|
| Q |
284 |
tttgacaattaataaattatagatcaatgactaaaattttcacattattttcttgaag |
341 |
Q |
| |
|
|||||| | | ||| |||||| ||||| |||||| |||||||||||||||||||| |
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|
| T |
13035875 |
tttgacgact----aatgatagatgaatgattaaaatcttcacattattttcttgaag |
13035822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 341
Target Start/End: Original strand, 7420832 - 7420988
Alignment:
| Q |
185 |
gacattagataaagggtgaataaatagagcaaacacgaatttgatgacaatcttgacaattgatctccacattgtaaatgttgaagaactattattcatt |
284 |
Q |
| |
|
||||||| ||||||| | |||||| | ||||||| |||| | ||||||||||||| ||||| ||| |||||| |||||||||||||||||||| ||| |
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|
| T |
7420832 |
gacattaaataaaggataaataaacatgtcaaacacaaattcgttgacaatcttgaccattgacctcagcattgtcaatgttgaagaactattattgatt |
7420931 |
T |
|
| Q |
285 |
ttgacaattaataaattatagatcaatgactaaaattttcacattattttcttgaag |
341 |
Q |
| |
|
||||| |||||||| || ||||||| | ||||| |||||||||||||| |||| |
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|
| T |
7420932 |
ttgacgattaataatttgatgatcaatcatcaaaatcctcacattattttctcgaag |
7420988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 7420657 - 7420782
Alignment:
| Q |
1 |
aataattttcaaatatttgtccatgctttgcaaggatgagaacgataaaaataagtttagatttgttctatttatccataatatgagctaggtagataca |
100 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||| || ||||| ||||| ||||| | |||||||||| |||||||| | || | | |
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|
| T |
7420657 |
aataattttcaaatatctcctcatgctttgcaaggatgagaacaatgaaaatgagtttgaatttgcaccatttatccatt---tgagctagatggacaaa |
7420753 |
T |
|
| Q |
101 |
agttgtagattagtagaactcatttaata |
129 |
Q |
| |
|
|| | ||||||||||||| |||||||||| |
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|
| T |
7420754 |
agatttagattagtagaattcatttaata |
7420782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 37245200 - 37245147
Alignment:
| Q |
385 |
atgttattctatgtgtgggcttgtgcctacgcaaaaattttagaaacttatttt |
438 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
37245200 |
atgttactctatgtgtaggcttgtgcctacacacaaattttagaaacttatttt |
37245147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 14539340 - 14539403
Alignment:
| Q |
394 |
tatgtgtgggcttgtgcctacgcaaaaattttagaaac-ttattttagtagaataatctaccca |
456 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| || ||||||||| ||||| |||||| |
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|
| T |
14539340 |
tatgtgtgggcttgtgcctacacaaaatttttagaaacttttttttagtagtataatgtaccca |
14539403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 7729591 - 7729627
Alignment:
| Q |
395 |
atgtgtgggcttgtgcctacgcaaaaattttagaaac |
431 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
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|
| T |
7729591 |
atgtgtgggcttgtgcctacacaaaaattttagaaac |
7729627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 31339756 - 31339792
Alignment:
| Q |
395 |
atgtgtgggcttgtgcctacgcaaaaattttagaaac |
431 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31339756 |
atgtgtgggcttgtgcctacacaaaatttttagaaac |
31339792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 4930913 - 4930873
Alignment:
| Q |
395 |
atgtgtgggcttgtgcctacgcaaaaattttagaaacttat |
435 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||||| |
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|
| T |
4930913 |
atgtgtgggcatgtgcctccacaaaaattttagaaacttat |
4930873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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