View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_21 (Length: 457)
Name: NF20321_low_21
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_21 |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 217 - 440
Target Start/End: Original strand, 32684284 - 32684507
Alignment:
| Q |
217 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684284 |
cctctaaaccagcagatctggcagctgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
32684383 |
T |
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| Q |
317 |
gacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgtattcaatgaaagaactaagcatttagaaattgacatatagcttg |
416 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684384 |
gacctcattgcgttatattttgatagtcaaagtgtcatttacataacatctatattattcaatgaaagaactaagcatttagaaattgacatatagcttg |
32684483 |
T |
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| Q |
417 |
ctgaacaagttacatcataaaaca |
440 |
Q |
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|||||||||||||||||||||||| |
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| T |
32684484 |
ctgaacaagttacatcataaaaca |
32684507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 274 - 440
Target Start/End: Complemental strand, 32560082 - 32559916
Alignment:
| Q |
274 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgta |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
32560082 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcgttgcgttatattgtgatagtgaaagtgtcatttacataacatgcattgta |
32559983 |
T |
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| Q |
374 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaaca |
440 |
Q |
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| T |
32559982 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaataagttacatcataaaaca |
32559916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 32684079 - 32684226
Alignment:
| Q |
12 |
cagagataggggaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684079 |
cagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct |
32684178 |
T |
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| Q |
112 |
gatttagcattcaaggcaagtttttctctaacaataattttgattcta |
159 |
Q |
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| T |
32684179 |
gatttagcattcaaggcaagtttttctctaacaataattttgattcta |
32684226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 32692182 - 32692276
Alignment:
| Q |
217 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaag |
311 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32692182 |
cctctaaaccagcagatctggcagctgaattgtgtgctgaaatgcaaggttgaatataaagaggaggttgacaatgaccgtaaagaactttgaag |
32692276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 32692090 - 32692124
Alignment:
| Q |
125 |
aggcaagtttttctctaacaataattttgattcta |
159 |
Q |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattcta |
32692124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 134 - 61
Alignment:
| Q |
86 |
gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattcta |
159 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattcta |
61 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 1904 - 1872
Alignment:
| Q |
125 |
aggcaagtttttctctaacaataattttgattc |
157 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
1904 |
aggcaagtttttctctaacaatgattttgattc |
1872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 1713 - 1745
Alignment:
| Q |
125 |
aggcaagtttttctctaacaataattttgattc |
157 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
1713 |
aggcaagtttttctctaacaatgattttgattc |
1745 |
T |
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