View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20321_low_22 (Length: 443)
Name: NF20321_low_22
Description: NF20321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20321_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 40753947 - 40754359
Alignment:
| Q |
16 |
cacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacg |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
40753947 |
cacaaaacacacaaaatggaagcctccggtggaagaacgttccttaacacaaggttatcttttgtagctatccggttacggagtgccttccaagcaaacg |
40754046 |
T |
|
| Q |
116 |
ccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacct |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754047 |
ccaccactttagatggtgcggggctcttccacatgtcttcaaaaactcccttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacct |
40754146 |
T |
|
| Q |
216 |
catgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctcctta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754147 |
catgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctcctta |
40754246 |
T |
|
| Q |
316 |
agactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctccaatccacaccctcctccactagcaccccaacttccccgactt |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
40754247 |
agactaagtaacaattcctcttcccctacaaacaaatttcttctccatatgaacctccaatccactccctcctccactagcaccccaacttcccccactt |
40754346 |
T |
|
| Q |
416 |
ttgcctccctttg |
428 |
Q |
| |
|
||||||||||||| |
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|
| T |
40754347 |
ttgcctccctttg |
40754359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 428
Target Start/End: Complemental strand, 13854183 - 13853770
Alignment:
| Q |
15 |
acacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaac |
114 |
Q |
| |
|
|||||| ||||||||| | || || |||||||||| ||| ||||| | ||| ||||||||||||| |||||||||||||| |||||||||||| |||| |
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|
| T |
13854183 |
acacaagacacacaaatttgaggcctccggtggaataacattcctaatcacgaggttatcttttgttgctatccggttacgaagtgccttccaagtaaac |
13854084 |
T |
|
| Q |
115 |
gccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacc |
214 |
Q |
| |
|
||||||||||| || || ||| |||||||||||| |||||||| |||| ||||||||||||| ||||| ||||||||| | ||| |||||||||| |
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|
| T |
13854083 |
gccaccacttttgacggcacggggctcttccacatatcttcaaacactcccttttcctcttcaccccacccatcctcccttgaaaccacctcctccaacc |
13853984 |
T |
|
| Q |
215 |
tcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctcctt |
314 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||||||| |||||||| ||| ||||||||||| || |
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|
| T |
13853983 |
tcttatacgccgacttcaccgaaaaaactccactatcttccaacttccaccaccacacatcaagctcttgagtccacctcaactcttccaaatcctcatt |
13853884 |
T |
|
| Q |
315 |
aagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctccaatccacaccctcctccactagcaccccaacttccccgact |
414 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| || |
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|
| T |
13853883 |
aagactaagcaacaattcgtcttcccacacaaacaaattccttctccatatgaacctccaatccactccctcctccactcgcaccccaacttcccccacc |
13853784 |
T |
|
| Q |
415 |
tttgcctccctttg |
428 |
Q |
| |
|
||||||||| |||| |
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|
| T |
13853783 |
tttgcctccttttg |
13853770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 8504763 - 8504854
Alignment:
| Q |
110 |
caaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacacc |
201 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||||||||||| |||||| || |||| || |||||||||| | ||| || ||||||||| |
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|
| T |
8504763 |
caaacgcaaccactttggacggtgccgagctcttccacatgttttcaaacaccatcttctcaccttcatcccaaacatcttcgctcaacacc |
8504854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 19471721 - 19471613
Alignment:
| Q |
167 |
tttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatct |
266 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| | |||||||| ||| || |||||||||||||| |||| ||| | |||||||| |||||||| |
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|
| T |
19471721 |
tttcctcttcatcccacaaatcttccttcaacaccactccctccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatct |
19471622 |
T |
|
| Q |
267 |
ccacacatc |
275 |
Q |
| |
|
|||| |||| |
|
|
| T |
19471621 |
ccactcatc |
19471613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 46641722 - 46641645
Alignment:
| Q |
45 |
tggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccac |
122 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||| |||||||| ||| | |||||||||||| ||||||||||||| |
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|
| T |
46641722 |
tggaaggacattccttaacacaaggttatattttgttgctatccgattaagaagtgccttccaagcaaacgccaccac |
46641645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 362
Target Start/End: Original strand, 33291113 - 33291268
Alignment:
| Q |
207 |
ctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaa |
306 |
Q |
| |
|
||||||| || |||| ||||||||||||| ||| |||| || ||||| |||||||||||| |||| ||||||||||||| |||| | || || |
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| T |
33291113 |
ctccaacttcgtgtaggccgacttcaccgtaaaggctcctgaatcgtctaaattccatctccactcatccttctcttgagaccatatcataccttctaag |
33291212 |
T |
|
| Q |
307 |
tcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctcca |
362 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||| |||| || | ||||||||| |
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|
| T |
33291213 |
tcctccttaagactaaggaataactcctcctcccatgcaaataattgtcttctcca |
33291268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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